Echinops telfairi (small Madagascar hedgehog): 101650453
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Entry
101650453 CDS
T08707
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
etf04040
]
101650453 (SCN11A)
Ion channels [BR:
etf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101650453 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
101650453
NCBI-ProteinID:
XP_012861594
UniProt:
A0ABM0ZRV6
LinkDB
All DBs
Position
Unknown
AA seq
1740 aa
AA seq
DB search
MEDKFYSVIFPDVRNFRPFTADSLDAINKRIAIQKQKKKSEDKTAIEPNPRPQLDLKASR
KLPKLYGDVPRELIAKPLEDLDPFYRNHKTFMVLNKKKTIYRFSAKRALFIFGPFNSIRG
LAIRVSVHSLFSMFIICTVIINCVFMAIAPGKDTSSTYAEYVFTGIYIFEALIKILARGF
VLDEFSFLRDPWNWLDSIVIATAFVSYCPKTNISLSSLRTFRVFRALKAISVVSGLKVIA
GALIRSVKKLVDVMILTFFCLSIFALVGQQLFMGNLNQRCVKVNCTNETIARDKEGCIEK
KKGSTEDRMCSLWSNASSCSEQFTCKHTKHNPDYNYTNFDNFGLSLLAMFRLMTQDSWER
LYQQTLHTTGYYSVFFFVVVIFLGSFYLVNLTLAVVTMAYEEQNRNVAAETEAKEKMFQE
AQQLLKEEKEALVAMGIDRSSLTSLEASSFSPKKRKFFGSKKRKSFKKKSRNDQPSGSDS
DEESKKKPHLLEQTKRLSQNLSVDPFDEHNDPFQRQRALSAVSILTITMQEQEKSQEPCL
PCGENLASKYLIWNCSPQWICVKKVLKTVMTDPFTELAITICIIVNTIFLAMEHNKMDEG
FVNMLNNGNQVFTGIFIAEMCLKILALDPYYYFQRRWNVFDCIVAILSFADVMTSTKWPF
FRSFRVLRVFKLAKSWPTLNTLIKIIGHSFGALGNLTVVLAIVVFIFSVVGMQLFGTKFN
ANISNCSLTSLCPRRWHMEDFYHSFLVVFRILCGEWIDNMWECLQATENYLCIVIFLLIM
VIGKLVVLNLFIALLLNSFSNEERDGNAEGGAKKTKVQLALDRFHRALCLVMRTLRHFCY
KWCRRQRSARPKEVMGDSASQSKDIIPLVTDIRRGPGTLEALGAPPLPPKAVGDGQERTW
LAPLAEEECDTESPDGNNPQTSLRPEAGKQVHELHQEAMKSTNLEVQSVEIDIFSEDDDY
LTLQNPQKKSDTASMLSECSTIDPTDPFRRLPEMTPKKQPERCLPKGLGCCFPCCGVDKR
KSPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDVHLSEQPQIQILLNCTDR
IFTNIFILEMVLKWVAFGFGKYFTSAWCWLDFIIVIISVTSLINVKELKSFRTLRALRPL
RALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCIMGVNLFSGKFERCLNGTEIAN
VDSIANKTQCENQSYPWENLRVNFDNVGMAYLALLQVATFKGWMEIMYAAVDSTGAGNQP
RFEENKYMYLYFIVFIILGSFFTLNLFIGVIIDNFNHQQKKISICRNKCQAFAFDLVTSQ
VFDILIISLIALNMVSMMAETADQSEDMTKILENLNLAFVVIFTVECLIKVFALRQYYFT
NGWNLFDCVVVVLSIVSTMISALEHHNSIPFPPTLFRIVRLARIGRILRLVRAARGIRTL
LFALMMSLPSLFNIGLLLFLVMFIYAIFGISNFSRVRPESGIDDIFNFRTFVSSMLCLFQ
ITTSAGWDTLLGPMLVTNSSCDPSVDDCYLSVKAITYFVSYIIISFLIVVNMYIAVILEN
FNIATEESEDPLSEDDFEIFYEVWEKFDPKATQFIKYSALSDFADALPEPLRVPKPNRFQ
FLVMDLPMVSGNRLHCMDILFAFTTRVLGESDGLDAMKAMMEEKFMEANPFRKLYEPIIT
TTKRKEEERCAAVIQKAFRKYLGKMPKGDLEEGPPHSSLQTFCNGDLSSAGVTVGKVHCD
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagttctactcagtgatcttcccagacgtgcggaatttccgccccttcact
gctgactctctcgatgccattaataagcggattgccatccagaagcagaaaaagaaatct
gaagataagacagccatagaaccgaatcctcgacctcagcttgacctcaaggcctccagg
aagttgcccaaactatatggtgacgtccccagggagctcatagcaaagcccctggaagac
ttggaccccttctacagaaatcataagacgtttatggtgttgaacaaaaagaagaccatc
taccgcttcagtgccaagcgtgccttgttcatttttggaccgttcaactcaatcagaggt
ttagccattagagtctcggtccactcgctgtttagcatgttcatcatctgcacggtcatc
atcaactgtgtgtttatggccatcgcccctgggaaagacaccagtagtacatacgctgag
tatgtcttcacggggatctatatttttgaagctttgatcaaaatattggcaagaggcttt
gttctggacgagttttctttccttcgagatccctggaactggctggactccattgtcatc
gcaactgcgtttgtgtcctattgcccgaaaaccaacatcagcttgtcctccttgcggacc
ttccgggtgttcagagctttgaaagctatttcagtggtttcaggtctcaaggtcatcgct
ggggccttgattcgctcggtgaagaagcttgtggatgtgatgattttgaccttcttttgc
ctgagtatcttcgccctggtggggcagcagcttttcatgggcaatctgaaccagagatgt
gtcaaggtgaactgtaccaacgaaacgattgctagagataaagagggttgcattgaaaag
aaaaaaggttcgacggaagacaggatgtgtagcctctggagcaatgccagctcctgctcg
gaacaatttacatgcaaacacaccaaacacaatcctgattataattataccaatttcgac
aactttggcttgtctttacttgccatgttccggctgatgacccaagattcgtgggagagg
ctttatcaacagacactgcacaccactgggtactactcggtcttctttttcgtggtggtc
atcttcctgggctcgttctacctggtgaacttgaccctggccgtcgtcaccatggcttat
gaggagcagaacaggaacgtggctgctgagacggaggccaaggagaagatgtttcaggag
gcccagcaactgttaaaggaggagaaggaggctctggttgccatgggaatcgacagaagt
tcgctgacgtctctggaagcctcctctttttccccaaagaagagaaaattctttggtagc
aaaaaaaggaagtcctttaagaaaaagtctagaaacgaccagccttccggatctgattca
gatgaagaatccaagaaaaagccacacctcctagagcaaaccaaacggctctcccagaat
ctgtcagtggacccgttcgatgagcataatgacccctttcaaagacagagggctttgagc
gctgtaagcatcctcaccatcaccatgcaggaacaagaaaagtcacaggagccttgcctc
ccgtgtggggaaaacctggcatcaaaatacctcatatggaattgcagccctcagtggata
tgtgtgaagaaggtgttgaaaactgtgatgactgacccctttactgaactagccatcacc
atctgcatcatcgtcaacaccatcttcctggccatggaacacaacaaaatggatgaaggc
tttgtgaacatgctgaataacgggaatcaggtgttcacgggcattttcatagcagagatg
tgcctcaaaatcctggcactggatccctactactacttccagcgccgctggaatgtgttt
gactgcattgtggcgattctgagttttgccgatgtgatgacctccaccaaatggcccttt
ttccgctccttcagagtgctgagggtcttcaagttagccaaatcctggccaacgttaaac
acgctgattaagatcattgggcactcctttggagcccttgggaacctgacggtagtcctg
gccattgttgtctttattttctcagtagttggcatgcagcttttcggtaccaagttcaat
gccaatatttctaactgtagcctgacaagcttatgtccccgacgctggcacatggaagat
ttctaccactccttcctggtggtgttccgaattctctgtggggaatggatcgacaacatg
tgggaatgtttgcaagcaactgaaaactacttgtgcatcgttatctttctattgatcatg
gtgataggaaaacttgtggtgcttaacctcttcattgccttgctgctcaactccttcagc
aacgaggagcgagacgggaatgcagaaggaggggctaagaagaccaaagtgcagctggcc
ctggaccgcttccacagggctttgtgcttggtgatgcggacgctgcggcatttctgctac
aagtggtgccggaggcaacgctcagccagaccaaaagaggtcatgggggattccgcatct
cagagcaaagatatcattcccctggtcaccgatatcagaaggggtcccgggacactggag
gctttgggtgccccacccttgccacccaaggctgtgggcgatgggcaggagcggacctgg
ttggccccacttgctgaggaagaatgcgataccgagtctcctgatggcaacaatccacag
acttccctacgacccgaagctggaaaacaggtccatgaacttcaccaggaagccatgaag
tctaccaacctagaagttcaaagtgtggaaattgacatattctcggaagatgatgattat
ctgacacttcagaatccccaaaagaagtctgacacggctagtatgctgtcggaatgtagc
actatcgaccctacggatccctttaggcgactacctgaaatgacccccaaaaagcaacct
gagagatgtctgcccaaaggcctgggatgctgctttccatgctgtggcgtggacaagaga
aagtccccctgggtcatatggtggaacctgcggaaaacctgctaccaaatagtgaagcac
agctggtttgagagctttattatctttgtgattctgctgagcagtggggcgctggtattt
gaagatgttcacctttcggaacaaccccaaatccaaatattacttaattgtactgaccgg
attttcacaaacatttttatcctggagatggttctgaaatgggtggcctttggatttgga
aagtatttcaccagtgcttggtgttggctggatttcatcattgtgattatctctgtgacc
agtctcatcaacgtaaaggagttaaaatctttccggactctacgagctctgaggcccctc
cgagcgctgtcccaatttgaaggaatgaaggtggtggtcaatgctctcataggtgctatt
cccgccatcctgaatgttttgcttgtctgcctcattttctggctcatattttgtattatg
ggagtaaatctcttttctggaaaatttgaaagatgtcttaatggaacagaaattgcaaat
gttgacagcattgccaacaaaacccaatgtgagaatcaaagttacccctgggaaaacctg
agagtcaactttgacaacgtgggaatggcttaccttgctcttctgcaagtggcaacattt
aagggatggatggaaattatgtatgcggccgtggattccacaggggccggcaaccagccc
aggtttgaggagaataagtacatgtacctgtacttcatagtttttatcatccttggctcg
ttcttcactctgaatctctttattggtgttattattgacaacttcaaccaccagcagaaa
aagataagtatatgcaggaacaaatgccaagcgttcgcgttcgacctggtcaccagccag
gtctttgacatcctcatcatcagtctcattgccctcaacatggttagcatgatggccgaa
acagctgaccaaagtgaagacatgacaaaaatccttgagaatctcaacctggcctttgtg
gttatctttacagtagagtgtctcatcaaagtctttgctctgaggcagtactacttcacc
aatggctggaatttatttgattgtgtggtcgtggttctttctattgttagcacaatgatc
tctgctttggaacaccacaacagcatcccctttcctcccacactcttcaggatcgtgcgc
ctggctcggataggccggatcctgagactcgtccgagccgcacgaggaattagaactctg
cttttcgccctgatgatgtccctgccttccctattcaacattggtcttttgctctttctg
gtcatgtttatctatgccatttttggcataagcaatttttccagggtgcggcccgagtct
ggaattgatgacatcttcaacttccgaacctttgtcagcagcatgctctgtctcttccag
atcaccacctcggcaggctgggacaccctcctcggccccatgttggtaacaaacagctcg
tgtgacccctctgtggatgactgctacctctctgtcaaagccataacctactttgtcagt
tacatcatcatctccttcctcattgtggtcaacatgtacatcgccgtgattttagagaac
ttcaatatcgccaccgaggaaagcgaggacccgctgagcgaagacgacttcgagatattc
tacgaagtctgggaaaagtttgatcccaaagcaacacagttcatcaaatattctgccctt
tctgactttgcggatgccctgcctgagcctttacgtgtaccgaagccaaacagatttcaa
tttctagtcatggacttgcccatggtgagtgggaatcgcctgcactgtatggatattctc
ttcgcgttcaccacgagagtgcttggtgaatccgacggcctggatgccatgaaggcaatg
atggaggagaagttcatggaagccaaccctttcaggaagctgtatgagcccatcatcacc
accaccaagaggaaagaagaggaaaggtgtgctgctgtgatccaaaaggcctttcggaag
tacctggggaagatgcccaagggtgacttggaagagggcccgcctcactcatcactccag
acattctgcaatggagacttgtccagcgcgggggtgactgtaggcaaggtccactgtgac
tga
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integrated database retrieval system
