Echinops telfairi (small Madagascar hedgehog): 101651142
Help
Entry
101651142 CDS
T08707
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101651142 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101651142 (XAB2)
03041 Spliceosome [BR:
etf03041
]
101651142 (XAB2)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101651142 (XAB2)
Spliceosome [BR:
etf03041
]
Complex B
Other components
Prp19-related factors
101651142 (XAB2)
Complex C
101651142 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
Suf
TPR_8
TPR_19
ARM_TT21
TPR_15
TPR_10
TPR_1
TPR_NPHP3
ARM_TT21_C
TPR_7
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
101651142
NCBI-ProteinID:
XP_004717379
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVSRPERPDLVFEEEDLPYEEEIMRNPFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRITHTRRTFDRALRALPITQHSRIWPLYLRFLRSYPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLANYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVSFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCECGELELRHENYEQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKEFEVRHGNDDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEEEEDDEMDLEPNEVRLE
QQSVPAAVFGSLKDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgtctcgcggcccgagcggccagacctcgtcttcgaggaagag
gacctcccctacgaggaggagatcatgcggaacccattctctgtcaagtgctggctccgc
tacattgagttcaagcagggcgccccgaagcccaggctcaatcagctgtatgagcgagcc
ctcaagctgctgccctgcagctacaagctctggtatcggtacttgaaggcacgccgggcc
caggtgaagcaccgctgtgtgacggaccctgcctacgaagacgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccggctgtggctcgattactgccaattcctg
atggaccagggccgcatcactcacactcgccgcacctttgatcgggccctccgggccctg
cccatcacgcagcactcacggatttggcccctgtacctgcgcttcctgcgctcctaccca
ctgccggagacagccgtgcgaggctaccgccgcttcctcaagctgagccccgagagcgca
gaggaatacatcgagtacctcaagtcgagcgaccggctagatgaggccgcgcagcgcctg
gccaccgtggtcaatgacgagcgcttcgtgtccaaagccggcaagtccaactaccagctg
tggcacgagctgtgtgacctcatctctcagaacccagacaaggtgcagtccctcagcgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggccaactactacatccgcagtggccacttcgagaaggcccgggacgtgtacgag
gaggccatccgcacggtgatgaccgtgcgcgacttcacccaggtgttcgacagctacgcc
cagttcgaggagagcatgatcgcggccaagatggagaccacgtccgagctggggcgcgaa
gaggaggacgacgtggacctggagctgcgcctggcccgctttgagcagctcatcagccgg
cggccgctgctgctcaacagtgtcctgctgcgccagaacccccaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgcccccgagagatcatcaacacctacacggag
gctgtgcagacggtggaccccttcaaggccacgggcaagccccacacgctgtgggtctcc
ttcgccaagttctacgaggacaatgggcagctggacgatgcccgggtcatcctggagaag
gccaccaaggtgaacttcaagcaggtagacgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccgccacgagaactacgagcaggcattgcggctgctgcggaaggccaca
gcgttgcctgcccgccgggcggagtacttcgacggctcggagccagtgcagaaccgcgtg
tacaagtccctgaaggtgtggtcgatgctggcagacctggaggagagcctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggca
tacgagcgcggcatctcgctgttcaagtggcccaacgtctcggacatctggagcacctac
ctgaccaagttcattgcccgctacgggggccgtaagctggagcgggcgcgggacctcttt
gagcaggcactggatggctgccctcccaaatacgccaagacgctgtacctgctgtacgcc
cagctggaggaggagtggggcctggcgcggcacgccatggccgtgtacgagcgcgccacc
cgggctgtggagcccgcccagcagtacgacatgttcaacatatacatcaagcgggccgcc
gagatctacggcgtcacccacacccgcagcatctaccagaaggccatcgaggtgctatcc
gacgagcatgcccgggagatgtgcctgcggttcgccgacatggagtgcaagctgggtgag
atagatcgcgctcgcgccatctacagcttctgctcccagatctgcgacccccggacgacc
ggggcgttctggcaaacgtggaaggagtttgaggtccgtcacggcaatgatgacacaatc
cgggagatgctgcggatccggcgcagcgtgcaggccacctacaacacccaggttaacttc
atggcctcgcagatgctcaaagtgtccggcagcgccacgggcaccgtgtcggacttagcc
cctgggcagagtggcatggacgacatgaagctgctggaacagcgggcagagcagttggca
gcagaggctgagcgggaccagccccctcgggcccagagcaagatcctctttgtgaggagc
gatgcatcccgggaggagctggcggagctggcccagcaggccaaccccgaggagatcgag
ctaggggaggaggaggaggacgatgagatggacctggaacccaacgaggtgcggctggag
cagcagagcgtgccggctgctgtgtttgggagcctgaaggacgactag
DBGET
integrated database retrieval system
