Echinops telfairi (small Madagascar hedgehog): 101652957
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Entry
101652957 CDS
T08707
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03013
Nucleocytoplasmic transport
etf03015
mRNA surveillance pathway
etf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101652957 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
101652957 (DDX39B)
03015 mRNA surveillance pathway
101652957 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101652957 (DDX39B)
03041 Spliceosome [BR:
etf03041
]
101652957 (DDX39B)
Enzymes [BR:
etf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101652957 (DDX39B)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101652957 (DDX39B)
Spliceosome [BR:
etf03041
]
Complex C
Other components
EJC/TREX
101652957 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101652957 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
101652957
NCBI-ProteinID:
XP_045148412
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVENELLDYEDDEVETAAGGEGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLDQLDMRRDVQEIFRMTPHEKQVMMFSATLSKDVRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggaaaatgagctcttggactatgaggatgatgaagtggagaca
gccgctggaggagagggggccgaagcccctgccaagaaggatgtcaagggctcctacgtc
tccatccacagctctggcttccgggactttctgctcaagccagagttgctccgtgccatt
gttgattgtggttttgagcatccgtcagaagtccagcatgaatgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatggggaagactgcagtgtttgtc
ctggccaccctgcaacagctcgaaccagttactgggcaggtgtctgtgctggtgatgtgt
cacacgcgggagttggctttccagatcagcaaggagtacgagcggttctctaagtacatg
cccaatgtcaaggtcgcggtgttttttggtggtctctctatcaagaaggatgaagaggtg
ctgaagaagaattgcccgcatatcgttgtggggacccctggccgaatcctcgccctggct
cgaaataagagcctgaacctcaaacatataaaacactttatcttggatgaatgtgataag
atgctcgaccagcttgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagatgttcgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgacgagaccaagctgacgctgcat
gggctgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
ctcctagatgtccttgagtttaaccaggtggtgatctttgtgaagtccgtgcagcgttgc
attgccctggcccagctcctcgtggagcagaacttccccgccatcgccatccaccggggc
atgccccaggaagagaggctgtctcggtaccagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctgtttggccgaggcatggacattgagcgggtgaacattgctttc
aactatgacatgcctgaggattccgacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagattctc
aatgatgttcaggaccgctttgaggtcaatatcagtgagctgccggacgagatcgatatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
