Echinops telfairi (small Madagascar hedgehog): 101656406
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Entry
101656406 CDS
T08707
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03013
Nucleocytoplasmic transport
etf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101656406 (UPF2)
03015 mRNA surveillance pathway
101656406 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101656406 (UPF2)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101656406 (UPF2)
mRNA cycle factors
P-body specific factors
101656406 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
101656406
NCBI-ProteinID:
XP_004712688
LinkDB
All DBs
Position
Unknown
AA seq
1230 aa
AA seq
DB search
MPAERKKPANMEEKESLLNNKEKDCSERRPVSSREKPKDDIKLPAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEERKKQEEQAKRQQEEAAAQL
KEKEESLQLHQEVWERHQLRKELRSRNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYSDFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKGAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKDSNKDDSKEAKDCKDNKEVSSSDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPLAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESVRQVHDLEQEFLIKLGKQLITEGSD
NDDDEGEEEEEENTDYLTDSNKENETDEENNEVMIKGGGLKHVPCVEDEDFIQALDKMML
ENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQ
FKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPA
NTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaaatatggaagaaaaagaatctttactgaacaac
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagagagaaaccaaaagatgat
atcaagcttcctgccaagaaggaggttattaaggtcccagaagataaaaagaagaaactg
gaagaagataaaaggaaaaaagaagacaaagagcgtaagaaaaaagaagaggagaaggtg
aaggcagaagaggaattaaagaagaaagaggaagaagaaaaaaagaaacatgaagaggaa
gagaggaagaagcaagaagagcaggcaaagcgtcagcaagaagaagcagctgctcagttg
aaagagaaagaggaatctcttcagcttcatcaggaagtttgggagcgacaccaattaagg
aaggaacttcgtagcagaaatcaaaatgctccagacaacagaccagaggaaaatttcttt
agccgactagactcaagtttgaagaagaatactgcttttgtcaagaaactaaaaacgatt
acagagcagcagagagactccttgtcccatgattttaatggcctaaatttaagcaaatac
attgcagaagctgtagcttctattgtggaggcaaagctaaaaatatctgatgtgaattgt
gctgtgcacttatgctctctctttcaccagcgctactctgactttgccccatcacttctt
caggtctggaaaaagcattttgaagcaaggaaagaagaaaagacacctaacattaccaag
ctgagaacggacttgcgtttcattgcggaattgacaatagttgggattttcacagacaag
gaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgatcgagaatcc
catactcatgtttctgtggtgataagtttttgtcgacattgtggagatgatattgctgga
cttgtaccaaggaaagtaaagggtgctgccgagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacagcagcctttccagaaccttttaaaagagtactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacagaacactgagagacaaaac
aggcgtattctacattctaaaggggagctaagtgaagatagacataaacaatatgaagaa
tttgctatgtcttatcagaagctgctggcaaattctcagtccttagcagaccttttggat
gaaaatatgccagatcttcctcaagataaaccaacacctgaagagcatgggcctggaatt
gatatattcacacctggtaagcctggagaatatgacttggaaggtggcatttgggaagat
gaagatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatc
ttgtttaaagataatgaaaaaagttgtcagaataaagactccaacaaagatgattctaaa
gaagctaaagattgtaaggataataaggaagtatcaagttctgatgatttagaacttgag
ctggagaatctagaaattaatgatgacaccttggagttagagggtggtgatgaagctgaa
gatcttacaaagaaacttcttgatgaacaggaacaagaggatgaagaagccagcactgga
tctcatctcaagcttatagtagatgcttttctgcagcagttgcccaactgtgtcaatcgc
gatctaatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagctaatagg
aaaaagttggtacgagcgctcttcatagttcctagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattacatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcggtttattggcgaactaactaagtttaagatgttcacaaaa
aatgataccttacactgtttaaagatgcttttatcagacttttcccatcaccatatcgaa
atggcatgcaccctccttgaaacatgtggaaggtttcttttcagatctcccgaatctcac
ctgaggaccagtgtacttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcaagatatgtcacaatggtggagaatgcctattactattgcaacccacctctggctgag
aaaaccgtgaaaaagaaacgtcctcctctgcaggaatatgttcggaagcttttatacaag
gatctctctaaggttactactgagaaggttttgaggcagatgcgcaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggactagtactctaccaagaggatgtt
ggaattcatgtagtggacggtgttttagaagatattcgattaggaatggaggttaatcag
cctaaattcaaccagagacggatcagcagtgccaagttcttaggggagctttataattac
agaatggttgaatcggctgttatttttagaactctttattcttttacgtcatttggtgtt
aaccctgatggttctccaagttcattggatccacctgaacatctcttcagaattagacta
gtatgcactattttggatacctgcggccagtactttgatagaggttccagtaaacgaaaa
ctcgattgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacgaaagaccatccgtttcctatcgacatagattacatgatcagcgatacactagaa
ctgctaagaccgaagatcaaactttgtaattctctggaagaatccgtcagacaggtgcac
gacctggaacaagaattcttaataaaactaggtaagcagttaattacagagggttctgat
aatgatgatgatgaaggtgaagaagaagaggaagagaatacagattatcttacagattcc
aataaggagaatgaaactgatgaagaaaataatgaggtaatgattaaaggtgggggactt
aagcatgttccttgtgtagaagatgaggacttcattcaagctctggataaaatgatgcta
gaaaatcttcagcaacgaagtggcgaatctgttaaagtacaccagctggatgttgctatt
cctttgcatctcaaaagccaactgaggaaagggccaccacttggtggtggggaaggcgaa
gcagagtctgcagacacgatgccatttgtcatgctaacaagaaaaggaaataaacagcag
tttaagatccttaatgtacccatgtcttctcaacttgctgcaaatcattggaaccagcaa
caggcagaacaagaagaaaggatgagaatgaaaaagctcacactagatatcaatgaacgg
caagaacaagaagattatcaagaaatgctgcagtccctagcacagcgcccagctccagca
aacaccaatcgcgagcgaaggcctcgctaccaacatccaaagggagcacctaatgcagat
ctaatctttaagactggtgggaggagacgttga
DBGET
integrated database retrieval system