Echinops telfairi (small Madagascar hedgehog): 101656461
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Entry
101656461 CDS
T08707
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101656461 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etf03041
]
101656461 (SF3B1)
03036 Chromosome and associated proteins [BR:
etf03036
]
101656461 (SF3B1)
Spliceosome [BR:
etf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101656461 (SF3B1)
Complex B
101656461 (SF3B1)
Complex C
U2 SnRNP specific factors
101656461 (SF3B1)
Chromosome and associated proteins [BR:
etf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101656461 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
101656461
NCBI-ProteinID:
XP_004701569
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagattgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggctgctcttgatgaagctcaaggagtgggccttgattctacaggttattatgat
caggaaatatatggtggaagtgacagcagatttgctggatacgtgacatcaattgctgca
accgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagcctggatatcatgcccctgtggcattgcttaatgatataccacagtctacagaacag
tatgacccatttgccgagcaccgacctccgaagattgcagaccgggaagatgaatacaaa
aagcataggcgcaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccccgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttgactaaagaagagagagaaattagacaacagttagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggggcagcagcatcccagcccccatcaaaaaggaagcggcgttgg
gatcagacagctgaccagactcctggtgccactcccaaaaagctgtcaagctgggatcag
gcagagactcctgggcataccccttccttaagatgggatgagacaccaggccgtgcgaag
ggaagtgagactcctggagcaaccccaggctcaaaaatatgggaccctacacccagtcac
acaccagcaggagctgctactcctgggcgaggcgatactccaggccatgcgacaccaggc
cacggaggcgcaacttctagtgctcgtaaaaacagatgggacgagactcccaaaacagag
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatagaggtgga
gattccattggtgaaacaccaactccaggagccagtaaaagaaagtcccgttgggatgaa
acaccagctagtcagatggggggaagcactcctgttttgacccctggaaaaacaccgatt
ggcacaccagccatgaacatggcgactcctactccaggtcacataatgagtatgactcct
gaacagcttcaggcttggcggtgggagagagaaattgatgaaagaaaccgtccactttct
gatgaagaactagatgctatgttcccagaaggctataaggtacttccacctccagctggt
tatgttcctattcgaactccagctcgaaaactgacagcgaccccaacaccgctaggtggt
atgaccggtttccacatgcagactgaagacaggactatgaagagtgtgaatgaccagcca
tctggaaatcttccatttttgaaacctgatgatattcagtactttgataaactattggtt
gatgttgatgagtcaacacttagtcctgaagagcaaaaagagagaaaaataatgaaatta
cttttaaaaataaagaatggaactcctccaatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaaccagattcttcctctgttgatg
tctcctacacttgaggatcaagaacgtcatttacttgttaaagtcattgatagaatatta
tataaacttgatgacttagttcgaccatatgtacacaagattcttgtggttattgaacca
ctgttgattgatgaagactattatgctagagtggaaggccgggagatcatttctaatttg
gcgaaggctgctggtctggcgactatgatctccaccatgagacccgatatagataacatg
gacgagtatgtccgtaacaccactgctagagcctttgctgtggtggcatctgccctgggc
attccttctttattgcctttcttaaaagctgtgtgtaaaagcaagaagtcctggcaagca
agacacaccggtattaagattgtgcagcagatagctatccttatgggctgtgccatcctg
ccacacctcagaagtttagttgaaatcattgaacacggtcttgtggatgagcagcagaaa
gttcggaccattagtgctctggctattgctgccttggctgaagcagcaactccttacggc
atcgagtcttttgattctgtgctgaagcctctgtggaagggtatccgtcaacacagagga
aagggtctggctgctttcttaaaagctattgggtatcttattcctctcatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagaatttcaatctcct
gatgaagaaatgaaaaaaattgtgctgaaggtggtaaaacagtgttgtggaacagatggt
gtagaagcaaactatattaaaacagagattcttcctcctttttttaaacatttttggcaa
cacagaatggctttggatagaagaaattatcggcagttagttgatactactgtggagttg
gcaaacaaagtaggtgcagcagaaatcatatctaggattgtggatgatcttaaagacgaa
gctgaacaatacagaaaaatggtgatggagaccattgagaaaattatgggtaacttggga
gcagcagatattgatcataaacttgaagaacagctgattgatggtatcctttatgctttc
caagaacagactacagaggactcagtaatgttgaatggctttggcacagtggttaatgct
cttggcaagcgagtcaaaccatatttgcctcagatctgtggtaccgttttgtggcgttta
aataacaaatcagcaaaagttaggcaacaggcagctgacttgatctcacgaactgctgtt
gttatgaagacttgtcaagaggaaaaactgatggggcatttgggcgttgttttgtatgag
tatttgggtgaagagtaccctgaagtgttgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctgcctagactc
actcccatcttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttgga
cgtatagctgacaggggagctgaatatgtttctgcaagagagtggatgcggatttgcttt
gagcttttagagcttttaaaagctcacaaaaaagctatccgtagagccacagtcaacaca
tttggttacattgcaaaggccattgggcctcatgatgtattggctacacttttaaacaac
ctcaaagtgcaggaaaggcagaacagagtctgtaccacggtagcaatagcgattgttgca
gagacatgttcacccttcacagtactgcctgccttaatgaacgaatacagagttcctgaa
ctgaacgttcagaatggagtcttaaagtcactttccttcctgtttgagtatattggtgaa
atggggaaagactacatttacgctgtaacaccgttactcgaagacgcgttaatggatcgg
gaccttgtacacagacagacagctagtgctgtggtacagcacatgtcacttggggtttat
ggatttggttgcgaagattcactgaatcacttgttgaactacgtgtggcctaatgtgttt
gagacatctcctcatgtaattcaggcagttatgggagcccttgagggcctgagagttgct
attggaccatgtagaatgttgcaatattgtttacagggtttgtttcacccagccagaaaa
gtcagagatgtgtactggaaaatttacaactccatctacattggttcacaggatgcgctc
atagcgcattacccaaggatctacaatgacgataagaacacctatattcgttatgaactt
gattatatcttataa
DBGET
integrated database retrieval system
