Echinops telfairi (small Madagascar hedgehog): 101657056
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Entry
101657056 CDS
T08707
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101657056 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101657056 (PATL1)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101657056 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
101657056 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
101657056
NCBI-ProteinID:
XP_004714981
UniProt:
A0ABM0J520
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MDDAKHLAECQLASVLPWGGPATRGDQAPPPPSEDETCRGALCTDPAALLEESLEDCPLD
EDEDAFQGLGEEDEEIDQFNDDTFGSGAIDDDWQEAHERLAELEEKVPVAVPEQTGNGER
DEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLR
RIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIG
TPPKQMAVPSFNQQILCPKPVHVRPPVPSRYPAPYGERMSPNQLCGVPNSSLLGHPFPPS
VPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVSSPLAAVNSKLLQGRVGQMLPPAP
GFRAFFSAPRPATPPPLPQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQN
RNQHRNLNGAGDRGSHRNSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFY
YQNYFEKLEKLSAAEEMQGEGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNN
PRKMIDAVVTSRSEDDETKEKQVRDKRRKTLFIIEKTYSLLLEVEDYERRYLLSLEAERP
ALVDERKHNICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSSEQAADI
LMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTITSLLQQLMNLPQSTAAPAPT
NPHLAAVLQNKFGLSLLLVVLSRGEDLQSSDPATESAQNSQWTEVMFMATRELLQIPQAA
LAKPISEPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgcaaagcaccttgcagagtgccagctggcctcggttctgccctggggaggg
cccgctacccgcggcgaccaggcccctccacctccgtccgaggacgagacctgtagggga
gcgctctgcaccgatcccgcagcccttcttgaggagtctttagaggattgccctctagat
gaagatgaagatgcatttcagggcctgggagaggaagatgaagagattgaccaattcaat
gatgatacttttgggtcaggggcaattgatgatgattggcaggaagcacatgagcgcctg
gccgaattggaagagaaggtgccggtggcagttcctgaacaaacaggcaacggggaaagg
gatgagatggacttgctgggtgaccatgaggagaacctggcagaaaggctgagtaaaatg
gtgatcgaaaatgaactagaagaccctgctatcatgagggctgtgcagaccagaccagtt
ttgcaaccccaaccaggaagtctcaattccagcatctgggatggatctgaagttctgagg
cgaattcgaggaccactgcttgctcaggaaatgcctaccgtgtctgtactagaatatgcc
ttgccccaaaggcccccacaaggcccagaagatgatcgggatctttctgagcgtgcatta
cccaggaggtccacttccccgatcattgggagcccccccgtgagagctgttcccataggc
accccacctaagcagatggcagtgcccagcttcaaccagcagatcctgtgtccgaagcca
gtccatgtccggcctccagtgccatcacgttaccctgctccctatggtgagagaatgtct
ccaaaccagctctgcggtgtcccgaactcttccctcttaggtcaccctttccctcctagt
gtacctccagttctgagccctctccagagagcacagcttctcggaggagctcagctacag
cctggacggatgtctcccagccagtttgcacgggtcccgggatttgtcagtagcccacta
gctgccgtgaattccaagttgctgcaagggcgagttgggcagatgcttcccccagcacca
ggctttcgtgccttcttcagtgctccccgccccgctaccccacctccactaccgcagcac
cctcctggcccaggacctcacctgcaaaacctcagatctcaggccccaatgtttcgacca
gacacgactcaccttcacccccagcaccgccggctcttgcatcaaagacagcaacagaac
agaaatcagcatcggaatctcaatggtgcaggagatagaggaagtcatcgaaacagtcat
caagatcatcttcgaaaggatccgtatgcgaatctcatgctgcagcgagaaaaggactgg
gtctccaaaatccagatgatgcaactgcaaagcactgatccttatctggatgacttctac
taccagaattactttgagaaactggagaaactatcagctgctgaagaaatgcaaggtgag
ggccctaagaaggaacgcaccaagctcatcacccctcaggtggccaaactggagcacgcc
tataagccagtgcagtttgaaggctctctgggaaagctcactgtctcgagtgtgaataat
ccccgcaaaatgatcgatgctgttgtaacgtctcggagtgaggatgatgagacaaaagaa
aaacaggttcgggacaaaagacgaaaaactcttttcataatcgagaaaacgtacagttta
ctccttgaggtggaggactacgaaaggcgctatctcctcagtctggaagcggagcggccg
gccctggtggacgaaagaaagcataacatctgtagcatgtatgacaacttaagggggaaa
ctgcctggacaagagagaccaagtgatgaccactttgtacagatcatgtgtatccggaaa
gggaagagaatggttgcccgtattctccctttcctctcctcagagcaagcagcggacatt
ctcatgacaacagccaggaacctccctttcctcatcaagaaggacgcacaggatgaggtg
ctgccatgcttactgagtcccttctccctcctcctctatcaccttccatcagtgaccatc
accagccttctgcaacagctaatgaacctacctcagagcacagctgcaccagcacccacc
aaccctcacctcgctgctgtgctccagaataagtttggcctgtcactgctcctcgtcgtc
ctgagccgtggggaagacctacagagttcagaccctgctacggaatcagcgcaaaacagc
cagtggacagaggtgatgttcatggcaactcgggagctgctgcagattccccaggcagcc
ctggccaagcccatctccgaacccaccaacctcgtgtccctcttctcacgctacgtcgat
cggcagaaactgaacttgctggagacgaaactgcagcttgttcaggggatccgataa
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