Echinops telfairi (small Madagascar hedgehog): 101660618
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Entry
101660618 CDS
T08707
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03008
Ribosome biogenesis in eukaryotes
etf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101660618 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
101660618 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etf03021
]
101660618 (XRN2)
03019 Messenger RNA biogenesis [BR:
etf03019
]
101660618 (XRN2)
03009 Ribosome biogenesis [BR:
etf03009
]
101660618 (XRN2)
03016 Transfer RNA biogenesis [BR:
etf03016
]
101660618 (XRN2)
Transcription machinery [BR:
etf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101660618 (XRN2)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101660618 (XRN2)
Ribosome biogenesis [BR:
etf03009
]
Eukaryotic type
Pre-60S particles
RNases
101660618 (XRN2)
Transfer RNA biogenesis [BR:
etf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101660618 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
101660618
NCBI-ProteinID:
XP_004697859
UniProt:
A0ABM0IDX0
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVNCVEEKPKECNGVKLPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKERVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPCGILTPQALGSRNSPGSQVANNARQAAYEMRMYNNSSPSVSPNTSF
TSDGCPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIAGMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPIHDFVLELYRTGSTAPVDLPPELCHGIQG
KFSLDEEAILPDQIVSSPIPLLQDLSQNTAISINFKDPQFAEDYIFKAIMLPGARKPAQV
LKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGVYSNAAPSPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQESWRGPPPLFQQQRFERNVGAEPLLPWNRMLQNQ
NAAFQPNQYQLLAGPAGYPPRRDDRGGRQGYPRDGRKYPLPPPSGRYNWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcttttttccgctggctcagccgcaagtacccgtccatcgttgtcaac
tgcgtggaggagaagccaaaagaatgtaatggtgtaaagcttccagtggatgccagtaaa
cctaatcccaatgatgtagagtttgataatctgtatttggacatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagatgaaatgatggttgcg
atttttgagtacattgacagacttttcaatattgtaagaccaagaagacttctttacatg
gcaatagatggagtggcacctcgtgctaaaatgaaccaacagcgctcgaggaggttcaga
gcatcaaaagaaggaatggaagcagcagttgaaaaggagcgagtcagggaagaaatattg
gccaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagtaactgcatt
acaccaggaactgagttcatggacaatcttgctaaatgtcttcgctattacatagctgac
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgcgagtgct
cctggtgaaggagaacataaaatcatggattatattagaagacaaagagcccagcctaac
cacgacccaaatactcaccattgtttatgtggagcagatgccgacctgattatgcttggc
cttgctacacatgaacccaactttactattattagagaagaattcaagccaaacaaaccc
aaaccatgtggtctttgtaatcagtttggacatgaagtcaaggactgtgaaggtttgcca
agagaaaagaaaggaaagcatgatgaacttgcagatagccttccttgtgcagaaggagag
tttatctttcttcgacttaatgttcttcgtgagtatttggaaagagaactcaccatggcc
agtctgccgttcacatttgatgttgagaggagcattgatgattgggtcttcatgtgcttc
tttgtgggaaatgacttccttcctcacttgccatctttagagattagggaaggtgcaatt
gaccgtttggttaacatatataaaaatgtggtgcacaagacgggggggtaccttacagaa
agtggctatgtcaatttgcaaagagtacagatgatcatgctagcagttggtgaagttgag
gatagcatttttaaaaaaagaaaggatgatgaggacagttttagaagacgacaaaaagaa
aaaagaaaaagaatgaagagagatcaacctgctttcactccttgtggaatattaacccct
caggccttgggttcaagaaattcaccaggttctcaagtagccaataatgcgagacaagcg
gcctatgaaatgaggatgtacaataactccagtccttcagtatctcccaataccagtttc
acttctgatggctgcccgtctccaataggaggaattaagcgaaaagcagaagatagtgac
agtgagcctgagccagaggataacgtcaggttatgggaagctggttggaagcagcgatat
tataaaaacaaatttgatgttgatgcagctgatgagaaattccgccgtaaagtcgtacag
tcttatgttgaagggctctgctgggttcttcgatattattaccagggctgtgcttcctgg
aagtggtattatccattccattatgcaccatttgcttcagacttcgaaggtattgcaggc
atgccttcggattttgagaagggcacaaaaccgtttaaaccacttgagcaactcatggga
gtttttccagctgcaagtggtaactttctacctccgtcatggcggaagctcatgagtgat
cctgattctagtataattgatttctaccctgaagattttgcaattgatttgaatgggaag
aaatatgcatggcaaggtgttgctctgttgccctttgtggatgagcgcagacttcgtgct
gctctagaagaggtgtacccagatctcactccagaagaaactagaagaaacagtcttggt
ggcgatgtcctgtttgtgggcaaacatcacccaatccacgactttgttttagagttatat
cgaacaggttccacagcgccagtggatttaccacctgaactctgtcatgggattcaagga
aagttttcattggatgaagaagctattcttccagatcaaatagtatcttctcctataccc
ctgttacaagatctgtcacagaacactgcaatcagtattaattttaaagacccacaattt
gctgaagattacatttttaaggccataatgcttccaggagcaaggaaaccagcacaagta
ttaaaacctggtgactgggaaaaatctagcaacgggcgacagtggaagcctcagcttggc
tttaatcgtgacagacgacctgtccacctggaccaggcagcatttaggacattaggccat
gttatgccaagagggtcaggaactggcgtttatagcaatgctgcaccatcacctgcaacc
tatcagggaaacttatacaggccactcttgagaggacaagcccagattccaaaacttatg
tcaaatatgagaccacaggaatcctggcgaggtccccctccccttttccagcagcaaaga
tttgaaagaaatgttggggctgagcctctgctgccatggaaccggatgctgcaaaaccaa
aatgcagcctttcagccaaaccagtaccagctacttgctggccctgctggatacccacct
cgacgtgacgatcgtggagggagacagggatatcccagagatggaaggaaataccctttg
ccaccaccctcaggaagatacaattggaattag
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integrated database retrieval system
