Echinops telfairi (small Madagascar hedgehog): 101661503
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Entry
101661503 CDS
T08707
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101661503 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101661503 (EDC4)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101661503 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
101661503 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EDC4L
DUF445
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
101661503
NCBI-ProteinID:
XP_004704657
LinkDB
All DBs
Position
Unknown
AA seq
1390 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGAPAENQRPSNTYNGDLNGLLVPDPLSSGDGT
STSKPGLRAMPPLNLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVGTSERTLLKGFMGSV
ADLAFAHRNSPQLACLDEAGNLFVWRLALVNGKIQEEILIHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSGHHTWPVDVSQLKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVLPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGHACFSSISEFLLTHPVLSFGIQMVSRCRLRHTEVLP
AEEESDSLGTDGSHGAGAVESAAGVLIKLFCIHTKALQDVQIRFQPQLGPDVVAPLPLHT
APEDFAFGEAQSELSADGLSSASPSTQPNLHRLVELPAPADFLSLSSEAKPKLMTPDAFM
TPSASLQQITVSPGSSSSSSSGSSSSLTAVSAISSTPAVDAPSLPRPSEELTLSPKLQLD
GSLQASPRSLLPGLLPGPADKLTKGPMQVPTAAASLSLELQEVEPLGPPQASPSRTRSPD
VISSASTALSQDIPEIASEALSRGACPAGLEPNSMASAASALHLLSPRPRPTPTELGPQR
GLDLDGSSGDGDRHSAPSLLEAALTQEASAPESQVWPTAPDITRETCSSLAESPRNGLQE
KHKSLAFHRPPYHLLPQHESQDTSAEQSDHDDEVASLATASGGFSSNVPTPRLPTKDWKT
KGSPRASPKLKRKGKKEDGELAVGSRLTEHQVAEPPKDWPAVLWQQQRELAELRHSQEEL
LQRLCSQLEGLQSTVMGHVERALDTRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQAL
SSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSSSVATKLTAVEGTMKENISKLLKS
KNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINESFRLGTQEYLQQ
LEGHMKSRKAREQEAREPVLAQLRGLVGTLQGATEQMAATVSSSVRAEVQHQLHVAVGSL
QESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAASTPVPAAHLDCQAQQAHILQL
LQQGHLNQAFQQALTAADLNLVLYVCEAVDPAQVFGQPPCPLSQPVLLSLIQQLASDLGT
RTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKAARRLNLM
LHGLVAPSLP
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcatctgcgggacatt
ctcaagctggaccggcccgcggggggtgcccctgcagagaaccagcggccatccaacacc
tacaatggggacctcaatgggctcctggttccagaccccctcagctcaggtgatggtacc
tcaacaagcaagcctggtctccgagccatgccaccccttaacctgcaagagaagcaggtc
atctgcctctctggagatgacagttctacatgcattggcattttggccaaggaagtggag
attgtggccagcagtgattccagcatttcaagcaaggcccgggggagcaacaaggtgaaa
atccaaccagtcgccaagtatgactgggagcaaaagtactactatggcaatctcatcgcg
gtgtccaactccttcctggcctatgccattcgggctgccaacaacggctcagcgatggtg
cgagtgatcagcgtgggtacgtcggagcgcaccctgctcaagggcttcatgggcagcgta
gccgacctggcctttgcccaccgcaactccccacagctggcctgcctggatgaggcaggg
aacctcttcgtgtggcgcctggccctggttaatggcaaaatccaggaagagatcctgatc
cacatccggcagcccgagggcacgccattgaaccacttccgccgcatcatctggtgcccc
ttcatcccggaggagagcgaggactgctgcgaggagggcagccccacagtggccctgctg
cacgaggaccgggctgaggtgtgggacttggacatgctgcgctcgggccaccacacctgg
cccgtggatgtgagtcagctcaagcagggcttcatcgtggtgaaaggccatagcacgtgc
ctgagtgaaggggccctctcccctgacgggactgtgctggctactgccagccatgatggc
tatgtcaagttctggcagatctacatcgaggggcaggatgagcccaggtgcctgcatgag
tggaaacctcatgacggtaggcccctctcctgcctgctcttctgtgacaaccacaagaaa
caggaccctgaggtcccattctggaggttcctgatcactggtgccgaccagaaccgggag
ctgaagatgtggtgcaccgtgtcctggacctgcctgcagaccattcgcttttccccagat
atcttcagttcagtgagcgtgctccccagcctcaaggtctgcctggacctctcggcagag
tacctgattctcagcgatgtacaacggaaggtcctctatgtgatggagctgctgcagaac
caggaggagggccatgcctgcttcagctccatctcggagttcctgctcacccaccccgtg
ctgagctttggcatccagatggtgagccgctgccgcctgcgccacacagaggtgctgcca
gccgaggaggagagtgacagcctggggactgatggttcccacggagctggggccgtagag
tctgccgccggcgtgcttatcaagctcttctgcatccataccaaagccctgcaggatgta
cagatccgcttccagcctcagctgggccccgatgtagtggcgccgctccccctgcacacg
gccccagaggactttgcatttggagaggctcagtctgaactgagtgccgatggcttgagc
tcggcctctcccagcacccagcccaacctgcaccgcctcgtggagctacctgcccccgcc
gacttcctcagtctgagcagtgaggccaagcccaagctcatgacgcctgatgctttcatg
acgcccagcgcctccctgcagcagatcaccgtgtccccgggcagcagcagcagcagtagt
agcggcagcagctcctctctcacagccgtgtctgccattagcagcaccccagccgtggac
gccccttccttgcccaggccctccgaggagctgaccttgagccccaagctgcagctggat
ggcagcctgcaggccagcccacgcagcctcctgcctggcctgctcccggggccagccgac
aagttgaccaaggggcctatgcaggtgcctactgctgccgcctcgctgtccctggagctg
caggaagtggagcccctggggccacctcaggcctcacccagccggacccgctccccggac
gtgatctcctcggcctccacggccctgtcccaggatatccccgagatcgcctcagaggcg
ttgtcccggggtgcttgtcctgctggcctcgagcccaacagcatggcctctgctgcctcc
gcgctccatctgctgtccccacggccccggccgacgcccaccgagctgggcccccagcgt
ggcctggacctggatgggagctctggggatggcgatcggcatagtgcgccctctctgctg
gaagcagccttaacccaggaggcttcggcccccgagagtcaggtctggcccacagccccc
gacatcactcgggaaacctgcagcagtttggcggaaagccccagaaacggcctccaggag
aagcacaagagcctggccttccaccggccaccgtaccacctgctgccgcaacacgagagc
caggacaccagtgccgagcagagtgaccacgatgacgaggtggccagcctagccactgcc
tcagggggctttagcagcaacgttcccacaccacggctgcctaccaaggactggaagacc
aaggggtcccctcgggcctcccctaagctcaagaggaagggcaagaaggaggacggggag
ttggctgtgggatcccggctgacggagcaccaggtggcagagccccccaaggactggcca
gcggtcctgtggcagcagcagagagagctggcagagctgcggcacagccaggaggagctc
ctgcagcgcctgtgcagccagcttgagggcctgcagagcaccgtcatgggccacgtggag
cgcgccctggacacgcggcatgagcaggagcagcggcggctggagcgggcactggctgag
gggcagcagcggggtgggcagttgcaagagcaactgacacagcagctgtcccaggcgctg
tcatcggcagtggcagggcggctggagcgcagcatccgggacgagatcaagaagacggtg
cccccatgtgtctcccggagtttggagcctgtggccggccagctgagcagctcggtagcc
accaagctcacagccgtggagggcaccatgaaggagaacatctctaagctcctcaaatcc
aagaacctgactgatgccatcgcccgtgcagctgcggacaccttgcaggggccgatgcag
gccgcctaccgtgaggccttccagagcgtggtgctgcctgccttcgagaagagctgccag
gccatgttccagcagatcaatgagagctttcggctgggcacgcaggaatacttacagcag
ctggagggccacatgaagagccggaaggcccgggaacaggaggcaagagagcctgtgctg
gcccagctgcgtggcctggtgggcaccctgcagggcgctaccgagcagatggcagccact
gtgtctagcagtgtccgggcggaggtgcagcaccagctgcatgtggctgtgggcagcctg
caggagtccatcctggcccaggtccagcgcattgtgaagggcgaggtgagtgtggccctc
aaggagcagcaggctgcggtcacctccagcatcatgcaggccatgcgctcagctgctagc
actccggtccctgctgcccacctggactgccaggcccagcaggcccacatcctgcagctg
ctgcagcagggccacctcaatcaggccttccagcaggccctgacagccgctgacttgaac
ctggtgctgtatgtatgtgaagcggtggacccggcccaggtgtttgggcagcccccttgc
ccgctctcacagcctgtgctgctctccctcatccagcagctggcctctgaccttggcacg
cgaaccgacctcaagctcagctacctagaggaggcggtaatgcacctggaccacagcgac
cccatcacccgggaccacatgggctccgtcatggcccaggtgcgtcagaagctcttccag
ttcctgcaggccgagccccacaactccctaggcaaagcggcccggaggctcaacctcatg
ctgcatggcctggtggcccccagcctcccgtag
DBGET
integrated database retrieval system
