Echinops telfairi (small Madagascar hedgehog): 101663842
Help
Entry
101663842 CDS
T08707
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf04140
Autophagy - animal
etf04148
Efferocytosis
etf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101663842 (VPS39)
04148 Efferocytosis
101663842 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101663842 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
etf04131
]
101663842 (VPS39)
Membrane trafficking [BR:
etf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101663842 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
KCTD11_21_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
101663842
NCBI-ProteinID:
XP_004709425
UniProt:
A0ABM0IWJ1
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPDSGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCEHSICVG
FKRDYYLIRVDGKGSTKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNAEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTLEPRLLVQSIELQRPRFIASGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDYSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLNLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLAENFKGLA
IPYLEHVIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEY
RQKLLVFLEISSYYDPSRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDQNRDGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHS
KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLRNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgattctagaaaagctgcctttgcagatcgactgc
cttgctgcctgggaggaatggcttcttgtgggaaccaagcaaggacaccttcttctctat
aggattcggaaggatgttgtgccggcagatgttgcatcacctgacagcggcagttgcaac
aggtttgaagtaacgctggagaaatccaataaaaatttctccaaaaagatccagcagatc
catgtggtttcccagttcaagattctggtcagcttgttagaaaataacatttatgtccat
gacctgttgacattccaacaaatcactacggtgtcaaaggcaaagggggcgtccctgttc
acctgtgacctccagcacacagagactggtgaggaggtgctgcggatgtgtgtggcagtg
aagaagaagctgcagctctatttctggaaggacagagaatttcatgagttgcagggggac
tttagtgtaccagatgtgcccaagtccatggcttggtgtgaacattctatctgtgtgggt
ttcaagagagactactacctaatacgggtggatggaaagggctccaccaaagagctcttt
ccaacaggaaaacagctggagcccttagttgcgcctctggcggatggcaaagtggctgtg
ggtcaggatgacctcaccgtggtgctcaatgcggaggggatctgcacgcagaagtgcgcc
ctgaactggacggacataccggtggccatggagcaccagcctccctacattattgccgtg
ttgcctcgatacgtcgagatccgaacacttgagcccaggctcctggtgcagagcattgaa
ctgcagaggccccgcttcattgcttcgggaggatcaaacatcatctacgtggccagcaat
cattttgtttggagactcattcctgtccccatggcaacccaaatccaacagcttctccag
gacaagcagtttgaattggccttgcagttggccgaaatgaaagattattccgacagtgag
aagcagcaacagatccatcacatcaagaatttatatgccttcaacctcttctgccagaag
cgctttgatgagtccatgcaggtgtttgcgaagcttggcacagatcccacccatgtgatg
ggcctgtaccccgacctgctgcccactgactacaggaagcagctgcagtacccgaaccca
ctgcctgtgctctccggggctgaactggagaaggctcatttggctctgatagactacctg
acacagaaacgaagtcagttggtgaagaagttaaatgactccgaccaccagtctagcacc
tccccactgatggaaggcacgcccaccatcaagtccaagaagaagctgttgcagatcatt
gacaccacgctgctcaagtgctacctgcatacgaatgtggccctggtggcccccttgctg
cggctggagaacaatcactgccacatcgaggagagcgagcacgtgctgaagaaggcacac
aagtacagcgagctgatcatcctgtatgagaagaaggggcttcacgagaaagctctgcag
gtcctggtggaccagtccaagaaagccaactcccccctgaaaggccacgagcgcaccgtc
cagtacctccagcacctgggcacagaaaacctgaatttgattttttcctactcagtgtgg
gtgctgagagacttcccagaggacggcctcaagatatttaccgaagatctcccagaggtg
gagtctctaccacgagatcgggtgcttggcttcttagcagagaactttaaaggcctggct
ataccttatctggaacacgtcatccacgtttgggaggagaccggttctcggttccacaac
tgcttgatccagctgtattgtgagaaggtgcaagggctgatgaaggagtacctcctgtcc
ttccccgcaggcaaagctcctgtcccggcgggagaggaagagggcgagctgggagaatac
cggcagaagctccttgtgttcttggagatttccagctactacgatcccagcaggctcatc
tgtgactttcctttcgatggcctcctagaagaacgagccctcctcctggggcgcatgggg
aagcacgagcaagccctcttcatctacgtgcacatcttgaaggataccaggatggctgag
gagtactgccacaagcattacgaccagaacagagacggcaacaaagacgtctatctgtcc
ctgcttcggatgtacctatcaccccccagtgttcactgcctggggccaatcaagctggag
ctgctggagccgcaagccaacctccaagccgccttgcaagtcctcgagctgcaccacagc
aagctggataccaccaaggccctcaacctcctgccagccaacactcagattaatgacata
cgcatctttctggagaaggtcttggaagaaaacgcacaaaagaaacggttcaatcaagtg
ctcaggaaccttctccatgcagagttcctgagggtccaggaagagcggattttacaccag
caggtgaaatgcatcatcacagaggagaaggtgtgcatggtgtgcaagaagaagataggg
aacagcgcatttgcaagataccccaatggtgtggtcgtgcactacttctgttccaaggag
gtgaactcggctgacacctga
DBGET
integrated database retrieval system
