Enterococcus thailandicus: CK496_12200
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Entry
CK496_12200 CDS
T05312
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eth
Enterococcus thailandicus
Pathway
eth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CK496_12200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eth03021
]
CK496_12200 (rpoC)
03400 DNA repair and recombination proteins [BR:
eth03400
]
CK496_12200 (rpoC)
Enzymes [BR:
eth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CK496_12200 (rpoC)
Transcription machinery [BR:
eth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CK496_12200 (rpoC)
DNA repair and recombination proteins [BR:
eth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CK496_12200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
PRC
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASZ08606
UniProt:
A0A179EPU8
LinkDB
All DBs
Position
complement(2584187..2587843)
Genome browser
AA seq
1218 aa
AA seq
DB search
MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIEPGNTNLEKKQLLTEREYREKREQYGQEFQAAMGAEAIKQLLD
NVDLDAEVAELKEELKSAQGQKRTRAIRRLDILEAFRASGNEPSWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMRELVQRELASNIKNAKRKIERQEDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVQGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFRDQNEAVIAWRNGYVHLHSRIGVN
PNTLGDKPFTDWQKERTMITTVGKIIFNEIMPQEFPYLNEPTDFNLTVQTPDKYFVEAGT
DIPAHIKEQELILPFKKKNLGNIIAEVFKRFKVTETSKMLDRMKDLGYKHSTHAGITVGI
ADISVLEEKQGIIQNAHKQVETITKQFRRGLITDDERYERVIAVWNAAKDEIQQKLMEGL
EAKNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLEIRAIREGNEIIESLE
DRLIGRYTRKEIRNPETDELIIEGNELISEDIAKQIVDAGVETVTIRSVFTCNTKHGVCK
HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGQAVITEVTGDVIDISEDPATRTKEVTIKGKTDTRTYTVPYTARMKVAEGDMIH
RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKVR
VMDPGDTEILPGTLMDIADFKDQNYNTLVAGGVPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMQRYRDMEPKEVGVASENVYSIS
DIEAQMAAEDAMNNNQTK
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaagtatgcaaataggtttggcttctcccgaaaaaatc
agaagctggtcttacggcgaagttaaaaagcctgagacgattaactatcgtaccttaaaa
cctgaacgcgaagggttgttctgtgagcggatttttggtcctacaaaagactgggaatgt
gcctgcggaaaatacaaacgtatccgttataaaggaattgtttgtgaccgttgtggagta
gaagttactcgctcgaaagttcgtcgtgaacgtatgggtcacattgaattagctgctcct
gtttcacatatctggtactttaaaggtattccttcacgtatgggtcttgttttagacatg
agtccacgcgcattagaagaaatcatttactttgcctcttatgtagttatcgaaccaggt
aatactaatttagagaagaaacaattattgactgaacgtgaatatcgtgaaaaacgtgaa
cagtatggtcaagaattccaagctgcaatgggtgcggaagcaatcaaacaattactagat
aatgttgatttggatgcagaagttgcagaattaaaagaagaattaaaatcagcacaagga
caaaaacgtacacgtgctattcgccgcttagatattttagaagcattccgtgcctctgga
aatgaaccaagctggatggttatggatgttattcctgttattcctccagatttacgtcca
atggttcaattagaaggtggacgttttgcaacaagtgatttaaacgatttgtatcgtcga
gtaatcaaccgtaacaatcgtttgaaacgtttattagatttgaacgcaccaggaatcatt
gttcaaaatgaaaaacgtatgttgcaagaagcagttgatgcattgattgacaatggtcgt
cgcggccgtccagttactggaccaggtaaccgcccattgaaatctctttctcatatgcta
aaagggaaacaaggtcgtttccgccaaaacttactaggtaaacgtgttgactattcaggt
cgttcagttatcgttgttggtcctttcttgaagatgtatcaatgtggtcttccaaaagaa
atggctatcgaattgttcaaaccatttgtaatgcgtgaattagtccaacgtgaacttgca
tcaaacatcaaaaatgcaaaacgtaaaatcgaacgtcaagaagatgaagtttgggatgtt
ttagaagacgtaatcaaagaacacccagtattacttaaccgagcacctacacttcacaga
cttggtattcaagcgtttgaaccagtattggtccaaggacgtgcaattcgtttgcatcca
cttgtttgtgaagcctacaatgccgatttcgatggagaccaaatggctgtccatgttcca
ttgaatgaagaagcgcaagctgaagcacgtatgttaatgcttgctgcacaaaatattttg
aatccaaaagacggtaaaccagttgtaacaccttctcaagatatggttttaggtaactat
tacctaactatggaagaagaaggtcgtgaaggcgaaggaatggtcttcagagatcaaaat
gaagctgtgattgcatggcgtaacggctacgttcatttacactcacgtattggtgtgaac
cctaacacattaggtgacaaaccatttactgattggcaaaaagaacgcacaatgattact
actgttggtaagattatctttaatgaaatcatgccacaagagttcccttacttgaatgaa
ccaactgactttaacttaactgttcaaacgccagataaatactttgttgaagcgggtaca
gatattcctgcacacatcaaagaacaagaattgatcttgccattcaagaagaaaaactta
ggaaatatcattgctgaagtcttcaaacgttttaaagtcactgaaacatctaagatgctt
gaccgtatgaaagacttagggtacaaacattcaactcatgcaggtattactgtagggatt
gcggatatcagtgttcttgaagaaaaacaaggaattatccaaaatgcacacaaacaagtt
gaaacaattacaaaacaattccgtcgtggtctaattacagatgacgaacgttatgaacgc
gtaatcgctgtttggaatgctgccaaagatgaaatccaacaaaaactgatggaaggtttg
gaagcaaaaaatccaatcttcatgatgtctgattctggagctcgtggtaacatctccaac
tttactcagcttgccggtatgcgtggattgatggccgctccgaatggtcgaatcatggaa
ttgccaatcatttcaaacttccgtgaaggactatctgtcttagaaatgtttatctcaacc
catggggctcgtaaagggatgaccgatactgccttgaagacagccgattcaggttacttg
actcgtcgtttagttgacgtagcgcaagatgtcatcatccgtgaagaagattgtggtact
gatcgtggtcttgaaattcgtgcaattcgtgaaggaaatgaaatcattgaatcattagaa
gatcgtttaattggacgttacactcgtaaagaaatccgtaaccctgaaacagacgaacta
attattgaaggaaatgaattaatttctgaagatatcgcaaaacaaatcgttgatgctggc
gttgaaactgtaacgattcgctcagtattcacatgtaatacaaaacatggtgtatgtaaa
cattgttatggacgtaaccttgcaactggttctgatgttgaagtaggtgaagcagttggt
acaatcgctgctcaatcaatcggtgaaccaggtacacagttaacaatgcgtacgttccat
acaggtggggttgccggagatgatattactcaaggtcttcctcgtgtccaagaaattttt
gaagcacgtaatccaaaaggacaagctgtgattactgaagtaactggtgatgttattgat
atctcagaagatcctgcaacacgtacaaaagaagtaacaattaaaggtaaaacagatact
cgtacgtacactgtaccttatacagcacgtatgaaagtcgctgaaggcgatatgatccat
cgtggtgctccattaacagaaggttcaatcgatcctaaacaattgttgcaagttcgtgat
gttttatctgttgaaaattatctattgcgtgaagtacaacgcgtgtaccgtatgcaaggg
gtagaaatcggcgataaacatattgaagtaatggtacgtcaaatgttacgtaaagttcgc
gtaatggacccaggtgacacagaaattttaccaggtactttaatggatattgcagacttc
aaagatcaaaactacaatactttagttgctggtggtgtccctgcgacatctcgtccagtc
ttgctaggtattacaaaagcttcattggaaacaaacagcttcttatctgctgcgtcattc
caagaaacaactcgtgtcttgacggatgctgcaattcgcggtaagaaagatccgcttctt
ggtttgaaagaaaatgttatcatcggtaaaatcatcccagctggtactggtatgcaacgt
taccgtgatatggaaccaaaagaagttggtgtggctagcgaaaatgtgtacagtatctct
gatattgaagcacaaatggctgctgaagatgcaatgaacaataatcaaacaaaataa
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