Candidatus Endomicrobiellum trichonymphae Rs-D17: RSTT_013
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Entry
RSTT_013 CDS
T05087
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
eti
Candidatus Endomicrobiellum trichonymphae Rs-D17
Pathway
eti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSTT_013 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eti03021
]
RSTT_013 (rho)
03019 Messenger RNA biogenesis [BR:
eti03019
]
RSTT_013 (rho)
Transcription machinery [BR:
eti03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RSTT_013 (rho)
Messenger RNA biogenesis [BR:
eti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSTT_013 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
ATPase_2
AAA_22
AAA_14
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAV58593
LinkDB
All DBs
Position
31684..32976
Genome browser
AA seq
430 aa
AA seq
DB search
MERGKSSMDVSVLSKRTMAELIEIAKSFKVDSVAGLRKQELIAKIFEAQTKENKSVYDEG
VLEILPDGFGFLRSPDYNYLPGPDDIYISPSQIKKFALRKGDTVAGYVRPPQSQQERYFA
LLQVRSINGQENLENIRDRDLFDNLTPLYPDEKMVLETKKEEISMRIIDMLVPIGKGQRV
LINAAPRTGKTVLLQKIANAVTKNNPDIVLMVLLIDERPEEVTDMQRSVKGEVISSTFDE
PSDRHIQVAEMVIEKAKRIVENGKHVVVLLDSITRLARAYNTAMPSSGRILSGGLDSNAL
QRPKRFFGAARNIEEGGSLTIIGTALVETGSRMDDVIFEEFKGTGNCEIYLDRKLADRRI
FPSIDLLRSGTRKEELLLSEDEKNKMWILRKWMNSMNSIEVMEELSKRLLNSKSNKDFLK
QMELSSMERL
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggggcaaatcttctatggatgtgtcggttttgtcaaaacggacaatggcagag
cttatagaaattgcaaagagttttaaagttgattctgttgcaggtttaagaaaacaagag
ttaatagcaaaaatttttgaggcgcagacaaaagaaaacaaatcggtttacgatgaaggg
gttttagaaattctgcctgacggttttggctttttgcgttctccggattacaattatctg
ccgggtccggacgatatatacatatctccttcacaaataaagaaatttgccttaagaaaa
ggcgatacggttgcgggttatgttcgtccccctcagtcgcagcaggaacgctattttgcg
cttcttcaggtaaggtcaatcaacggacaggaaaatcttgaaaatataagagaccgcgat
ctttttgataatttaacgccgctttatcctgacgaaaaaatggttcttgaaacaaaaaaa
gaagaaatatcgatgagaattatagatatgcttgttcctatagggaagggacagagagtt
ttgattaatgctgctccgagaacgggcaaaaccgttcttctgcaaaaaatagctaatgca
gtaactaaaaataatcccgatattgttcttatggttctgttgatagatgaaagaccggaa
gaagttacggatatgcagcgttcagttaaaggcgaagtcatatcctcaacttttgacgag
ccgtcagacaggcacatacaggttgccgaaatggttatagaaaaagccaaacgaatagtt
gaaaacggaaaacacgtagttgttcttttggattccattacaaggcttgcaagagcttac
aatacggcaatgccgtcaagcggaagaattctttccggcggtctcgattcaaatgctctg
cagagacctaaaagattttttggagctgcaagaaatattgaagaaggcggcagtcttact
attataggcactgctcttgttgaaacaggaagcagaatggacgatgtcatatttgaggag
tttaaaggaaccggtaactgcgagatttatcttgacaggaaacttgccgacagaagaata
tttccctcgatagatcttttgcgttcaggcacgagaaaagaagaactccttctaagcgaa
gatgaaaaaaacaaaatgtggatattgagaaaatggatgaactcaatgaattccatagaa
gttatggaagagttaagcaaaagattactcaactcaaaatctaataaagatttcctaaaa
cagatggaactttccagtatggaaaggttataa
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