Candidatus Endomicrobium trichonymphae Rs-D17: RSTT_059
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Entry
RSTT_059 CDS
T05087
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eti
Candidatus Endomicrobium trichonymphae Rs-D17
Pathway
eti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSTT_059 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eti03021
]
RSTT_059 (rpoC)
03400 DNA repair and recombination proteins [BR:
eti03400
]
RSTT_059 (rpoC)
Enzymes [BR:
eti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSTT_059 (rpoC)
Transcription machinery [BR:
eti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSTT_059 (rpoC)
DNA repair and recombination proteins [BR:
eti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSTT_059 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAV58639
LinkDB
All DBs
Position
133800..137573
Genome browser
AA seq
1257 aa
AA seq
DB search
MNKVNFGRIRIPIDPPPLLKMQKDSFSEFLQQNVAPEKRKLQGLESAFRDIFPLTNSDGN
LVLEYVSYAFGEPKYSVEESITRDATYALPLKVKLRLICKKEDDIEKELSEQEVYFGDIP
LMTDTATFIINGAERVVVSQIHRSPGVIFEEDEEKRVTVLGKPLYFARMIPYRGAWVEFE
FDQNGILYVRIDRKRKIFVTTFLRSLGFRTDEEILNLFKEVKEVSLDAALTSLTGEYIAE
DISDENTGEIIADTGRELQEDLIKKLWAKGFTKVTVFKDVSILLTLKKDTIKNQKEAINY
IYKVLKTQEFVVQERAQVFLEELLFKSVRRYDLTKIGRYKILKKLAPIFKYYEKNFNLNI
PPGTKRTLTKEDVVVTLKYLLMLYSGETEFTENGQTTKIVLDDIDHLGNRRVRSVGELLE
NQIRIGLVQMARTVREHMNNQDKFNVTPRSLINITQFIAQIRKFFGTSQLSQFMDQINPL
AELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITSLSAFASV
NPYGLIETPYKKVKNGRATDKIEYLTADKEDEFFVAQANTPLDDKGNILSDLVQGRKWDD
FLFQSPAKVDYMDVSPMQVISISAALIPFLEHDDANRALMGCNMQRQAVPLLLAEVPLVS
TGIEKKVAEDSGVVVVSDSDGEVVSVSSDEIMIYSQSKKIEVYELKKYLRSNQDTCINQK
PLITLGDIVKKGQIIADGPATSDGQLSLGQNILVAYMPWDGYNFEDAMLLSEKLIQDDKF
TSIHIREFKTEARETKERPEEITKDIPNVGAEDLLDLDEYGIIKVGSMVQRGDILVGKTA
PKGEQQMTPEERLLRVLFGKKAEDVQDVSLRVPPGISGKVIGVRVFIRLEKITDKEKKKK
QKEMYSVYEAAKAKLCKDKKEQLEIAKKSETAKIEAIYATKEEILRQNYESEKEKLKKGD
DLPVSVNKTVKVYIAAKLKVQVGDKLAGRHGNKGVVARILPVEDMPHLPDGTPVDCVLSP
LAIPSRMNVGQLLEIMLGWSGKELGVQMITPVFDGASEEQIKDYVEKAKAKILDKKKKLL
IDHGLEGVELEESLSKFADESLPTSDCKIKLYDGRTGEPFMEKVTIGVMYVMKLNHLVED
KMHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGAAHILQEFLTVKSDDVEGR
VKMYDSIIKGESISKPGVPESFKVLVSELKSLALNVELFNGKRQKDNHEKMKGVDKK
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagttaactttggaagaattagaattccgatagatccaccacctcttttgaaa
atgcagaaagattctttttctgaatttttgcagcagaatgttgctcctgaaaaaaggaag
cttcaaggtcttgaaagtgctttcagagatatattccccttgacaaactccgatggaaat
cttgttttggagtatgtttcttatgcttttggcgaacctaaatattctgttgaggagtcc
attaccagagatgctacctatgcacttcctctgaaagtaaagttaagacttatatgtaaa
aaagaagacgatatagagaaagaactttcagagcaagaagtgtatttcggagatattccc
ttgatgaccgatacggctacgtttattataaatggagcggagcgcgtcgtcgtaagccag
attcaccgttctccaggagtaatttttgaagaagatgaagaaaaaagagttaccgttttg
ggcaagcctttatactttgcaagaatgataccttacagaggtgcatgggttgagtttgaa
tttgatcagaacggtattctatatgttagaattgaccgcaaaagaaaaatatttgtaacc
actttcctgcgttcgctgggtttcagaaccgacgaagaaattttaaatctctttaaagag
gttaaagaagtatcgctggatgcggctctgacttctcttacgggcgaatatattgccgaa
gatatttccgacgaaaatacgggtgaaataattgcggataccggaagagaactgcaagaa
gatcttataaaaaaactttgggcaaagggttttactaaagtaacggtttttaaagatgtt
tcaattcttttgaccctaaagaaagatactataaaaaaccaaaaagaggctattaattac
atatataaagttttaaaaactcaagaatttgttgtacaggaaagagcacaggtgtttttg
gaagaacttctctttaaatccgtccgaagatacgatttgactaaaatcggaagatataaa
atattaaaaaaacttgctccaatttttaaatattacgaaaagaattttaatttaaacatt
cctccgggaactaaaagaactcttacgaaagaagatgtagtggtgacgctgaaatatctt
ttgatgctttatagtggagagactgaatttaccgaaaatggacagactactaaaatagtt
ttagacgatatagatcatttaggtaacagacgcgtgagatcggtaggagaattgctggaa
aaccagataagaataggacttgtccagatggcaaggactgtaagagagcatatgaataat
caggacaaattcaatgttactcctagatctcttataaatattacgcagtttatagcccag
ataagaaagtttttcggaacttcgcagctctcgcagtttatggaccagataaatcctctg
gcagaacttactcataagagaagactttccgctttgggccccggtggtttgaatagaaaa
agggcaggatttgaggtaagagatgttcatcatacacattacggcagagtttgccctatt
gagacgcctgaaggaccgaacatcgggttaataacgtctctctcggcttttgcaagtgta
aatccttatggtttaatagaaactccttataaaaaagtgaaaaacggcagggcaacagac
aaaattgaatatctgaccgcggataaagaagatgagttctttgttgcgcaggcaaacact
cctttagatgacaaaggaaatattttgtcggatttggtgcaaggacgaaaatgggatgat
ttcttatttcaatctcccgctaaggttgattatatggatgtttctcctatgcaggtgata
tccatttcagccgcattgattccttttttggaacacgatgatgccaaccgtgctttgatg
ggttgcaatatgcagcggcaagcagtgccgttgctgttagcggaagtccctttggtttca
accggcattgaaaaaaaagttgcagaagattcaggcgtggttgtagtttcagactccgac
ggcgaagtcgtgtctgtttcttctgatgaaataatgatttattcccaaagtaagaaaata
gaagtatatgaattgaaaaaatatctgcgctccaatcaggacacgtgcataaaccaaaaa
cctttgataactttgggcgatattgttaaaaagggacagataatagcagatggtccggcg
acaagcgatgggcagttgtctctgggacagaatattctggttgcttatatgccatgggat
ggatataattttgaagatgcaatgttgctgtcggagaaattaatacaagatgataaattt
acttcgattcatatcagagagtttaagactgaagcaagagagacaaaagaacgtcctgaa
gaaataacgaaagatattccaaatgttggtgcggaagatcttttggatcttgatgaatac
ggaataattaaagttgggtcgatggttcaaagaggtgatatacttgttggaaaaacggcg
cctaaaggtgaacagcagatgactcccgaagagagactgcttagagtgctgttcggcaaa
aaagcagaagatgtgcaggatgtatcgcttagagtgccgccgggaatatcgggtaaagtt
ataggtgtaagagttttcataagacttgaaaaaattacagacaaagaaaagaagaaaaaa
cagaaagaaatgtacagtgtttatgaagcggcaaaagcaaaactttgtaaagataaaaaa
gaacaacttgaaattgcaaagaaatctgaaactgcaaagatagaagctatttatgcgaca
aaagaagaaattttaagacagaattatgaatctgaaaaagaaaaattaaaaaaaggcgat
gatctgccggtttcggtaaataagacggtaaaagtttatattgcggcaaaacttaaagtt
caggtgggcgataaacttgcgggaagacacggaaataaaggtgttgttgcaagaatactt
cccgtcgaagatatgccgcatcttccagatggaacgccggttgactgcgttctttcgccg
cttgcaattccttcgcgtatgaatgtgggacagcttctcgaaattatgctgggatggtcc
ggaaaagagcttggagtgcagatgataacacccgtatttgacggtgcgagcgaggaacag
ataaaagattatgtagaaaaggctaaagctaaaatattggataaaaagaaaaaactgctg
attgatcacgggttagaaggtgtagaacttgaagaatctttgagtaagtttgccgatgaa
agtctgccgacgagcgactgtaaaattaagctttatgatggaagaaccggcgagccgttt
atggaaaaagtaacgataggtgttatgtacgttatgaagctcaatcatcttgtggaagat
aagatgcatgcaagatctaccggtccttactctcttattactcggcagcctctgggcgga
aaagcacagtttggtggacagaggtttggagaaatggaagtatgggctatagaaggttac
ggtgcagctcatatactgcaggaatttttaaccgtaaagtctgatgatgttgaaggaaga
gtgaaaatgtatgactcaatcataaaaggcgagtcgatatccaaacccggcgttcctgaa
tcgtttaaagttttggtaagtgagcttaagtctttagcccttaacgttgagcttttcaac
ggcaaacgccagaaggataaccatgagaaaatgaaaggtgtcgataaaaaataa
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