Candidatus Endomicrobiellum trichonymphae Rs-D17: RSTT_060
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Entry
RSTT_060 CDS
T05087
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eti
Candidatus Endomicrobiellum trichonymphae Rs-D17
Pathway
eti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSTT_060 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eti03021
]
RSTT_060 (rpoB)
03400 DNA repair and recombination proteins [BR:
eti03400
]
RSTT_060 (rpoB)
Enzymes [BR:
eti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSTT_060 (rpoB)
Transcription machinery [BR:
eti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSTT_060 (rpoB)
DNA repair and recombination proteins [BR:
eti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSTT_060 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BAV58640
LinkDB
All DBs
Position
137573..142354
Genome browser
AA seq
1593 aa
AA seq
DB search
MVKINFQIKKKKSNDPNFIGFDAVRVSVASPDQIKTWSYGEVKKPETINYRTFKPERDGL
FCNRIFGPTKDWECHCGKYKYIKYKGTICDRCGVEVTESKVRRERFGHINLAVPVAHLWF
LRKPPSRVGILLNMKISDLEKVIYYAKYIVMGDLKDRSGISFFARKGMLMGGEDFNLFKC
GINNPIVKEEFKNIFDGIVCEEIKLDSNLTKALKQLKVLVKGQADSAGISTEEAAKKILE
NVKKGDIYYKVYFKPHSVYYYIDLDPSSHGEIKKILSEKFEKSSTVSITETDKKIRIEFF
DIEKDKIYNDLRKDSFALKKYEGCLRIEILKNKIPFIENFSRSDSFVLLEESDINNIQNG
FGDSLKVNIGAEAVRSLLEEINLDDEMKNIYAEIKKTKSDAERARLLRKLRVVEGFLNSQ
TRPEWMILTVLPVIPPDLRPLVALDGGRFATSDLNDLYRRIINRNNRLRHIEQLKAPIVM
INNEKRLLQEAVDALIDNDSRIRPVTGAGNRTLKSLSDTLKGKRGRFRQNLLGKRVDYSG
RSVIVVGPNLRLNQCGIPKEMALELFKPFIVKELIKQENITLRSAKRMLERGDLKVWNIL
EKVTQSHPVLLNRAPTLHRLGIQAFEPVLVEGKSIQLHPLTCSAFNADFDGDQMAVHLPI
SLEAQLEARVLMMATRNILSPASGRPIAVPSQDMVLGNCYLTKEKYGVVGEGKVFSSVSE
AISAYQAEKVDLQARIKVAGITSIRDKNLNNDDEQPDVTKWKNCKSEDDTEIINYTTVGR
IIFNEQLPKNDDGSYALEYQNKSMTKKELVALVDRCYKELGQFKTTVLLDEIKRIGYKYA
TLAGISISIDEMKVPTEKEKMVREAKTKISEIEKQAKLGLITESERYNRIIDIWTRVTDE
ISDIMFDEMRKEETKAYKPGQNRFNSIFMMADSGSRGSRQQVRQLAGMRGLMAKPQKKLT
GGIGEIIETPIISNFREGLTVLEYFISTHGGRKGLADTALKTAEAGYLTRRLVDVAHDVV
VREEDCGTVNGVFIGTLCCGDEIIEKIDERVVGRTALDNVVDIVHDDLIIKRGELITPKK
AEKLVEAGIDKIGIRSVLTCESEHGVCAKCYGVNPATGEQVEMGEAVGILAAQSIGEPGT
QLTLRTFHIGGAASRVVQRSEVYAENNGTVNYYNLKTIQNKDGETIVLSRNAELVYTEYP
VYRKQIYQIPYGAVIKIYDGQTVEIRVNPITGMKKDILIAKWDPHSKPIISEFAGTVNFV
DVKDGVTLQREKSKITGQIERVIIEHSSDRRSPRIVVKKDDGSVVEYPLPVDTTLVVRDK
DRVKSGDILAKIPQEISRTKDITGGLPRVAELFEGRRPRNVAVVSEIDGIVHLVGPTVKG
NVKVEVENPETKMKKSYLVRAGRHLVVYEGDRVKEGEALSDGAINPHDILKVKGPKEVQE
YLVNEIQQVYRLQGVSINDKHIEIIVRQMLSNVRITDSGDSHYLNGEIVSRYKYEIDRKA
IKGKKGKAPIAHSILLGITKASLSSDSFISAASFQETTRILTEAAISGQVDYLKGLKENV
SIGRLIPAGTGLAAVDIGDNNKFYSREQNDANN
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaataaattttcaaatcaaaaagaaaaagtcaaacgatcccaattttattggt
tttgacgctgtaagagtgtccgttgcaagtcctgatcagataaaaacatggtcttacggt
gaggttaaaaagccggaaactataaattatagaacgtttaagcccgagagagacggtttg
ttctgcaacagaattttcggtcctacaaaagactgggaatgtcattgtggaaagtataaa
tatataaaatacaagggaacgatatgcgacagatgcggcgttgaggtgactgagtctaaa
gtgagaagagagaggttcggtcatattaatcttgcggttcccgtagcccatttgtggttt
ttgaggaaaccgccgtcaagagtcggaatacttttaaatatgaaaatttccgatttggaa
aaggttatttactatgcgaaatatatagtaatgggagatttaaaagatcgatcgggaatt
tctttttttgccaggaaaggcatgctcatgggaggagaagattttaatttgtttaagtgc
ggaataaacaatcccatagtaaaggaagaattcaaaaatatttttgacggtattgtttgt
gaagaaataaagctcgattccaatttgacaaaagctttgaaacagcttaaagttttagtg
aaaggtcaagctgattcggcgggaatatctaccgaagaagccgcaaaaaagattcttgaa
aatgtcaaaaaaggtgacatttattataaagtttattttaaacctcattcagtgtattat
tatattgatttggatccatcaagccacggagaaataaaaaaaattctttctgaaaagttt
gaaaaaagttctacggtttcaataacggagactgataaaaaaattaggatagaatttttt
gatattgaaaaagacaaaatttacaatgacctcagaaaagattccttcgctctaaaaaaa
tatgaagggtgtcttagaattgagatattaaaaaataaaattccttttatagagaatttt
tcaaggtctgatagttttgttctgcttgaggaaagcgatataaataatattcaaaatggt
ttcggggacagtttaaaagttaatatcggagcggaggcagtgagaagtcttctggaagaa
attaatctggacgatgaaatgaaaaacatttatgcggagattaaaaagacaaaatcggat
gcagaaagagcgaggcttctcagaaaactcagagtagtcgaaggatttttgaattctcag
acaagaccggagtggatgattttgaccgttcttccggtaatccctcccgatttgagacca
ttggttgctttggacggtggaagatttgcaacttctgatttaaacgatttatacagaaga
ataataaacagaaataacagactgcgtcacattgagcaactgaaagctcccatcgttatg
ataaataatgaaaagagacttttgcaggaagcggtcgacgctttaatagataatgattcg
aggataagaccagtgacgggcgccggcaacagaacactcaagtctctgtctgacacgctt
aaaggcaagcggggacgtttcagacagaatttgctggggaaaagagtcgattattctgga
agaagtgtcatagtggtgggacctaatctgagattaaatcagtgtgggattcccaaagaa
atggctttagaacttttcaagccttttattgtaaaagagttgataaaacaggaaaatata
acgctgagatccgctaagagaatgcttgaaagaggtgatttaaaagtatggaacatactt
gaaaaagttacgcagagtcatcccgttcttttaaatagagctcctacacttcacaggttg
ggcatacaggcttttgaacctgttttggttgaagggaagtcaatacagcttcatcctctt
acatgttccgcttttaatgcagattttgacggggaccagatggcggttcatctgcccata
tctcttgaagcgcagcttgaagcgagagttttgatgatggctaccagaaatatactatca
ccagcttccggaagacctattgccgttccgtcgcaggatatggttttggggaactgctat
cttacaaaagaaaaatacggggtcgtgggtgaaggaaaagttttttcgtcggtaagcgag
gctattagcgcctatcaagcagagaaagtagatttgcaggcgagaattaaagtcgctgga
attacaagtataagagataaaaaccttaataatgatgacgaacaaccagatgttacaaaa
tggaaaaactgcaaatctgaagacgacacagaaattattaattatacgactgtgggaaga
atcatatttaatgaacagcttcctaaaaatgacgatggttcgtacgctttagaataccag
aacaagagtatgacgaaaaaagaactcgtcgcacttgtcgatagatgttataaagagctg
gggcagtttaaaactactgttcttttggacgagataaagaggataggttataaatacgca
acccttgccggtatttctatttctatagacgaaatgaaagttccgactgaaaaagaaaag
atggtgagagaggcaaaaacaaaaatcagcgaaattgaaaaacaagctaagctcggcttg
ataaccgagtcggaacgttacaacagaatcattgatatttggacgagagttaccgacgaa
atctcggatataatgtttgacgaaatgagaaaagaggaaacgaaagcctataagccggga
cagaatcgtttcaattcgatatttatgatggcggattccggatcaagaggttcaagacag
caggtaagacagcttgcgggtatgcgcgggcttatggcaaagcctcaaaagaagcttacg
ggaggtatcggtgaaattatcgaaactcctattatctccaacttcagggaaggtcttacg
gtgttggagtactttatttcaactcacggaggacgcaaaggtttggctgatactgctttg
aaaaccgcagaagcgggttatctaacaagaagacttgtcgatgtagcgcatgatgttgtc
gtaagagaagaagactgcggaacagtaaacggagtatttatcgggacactgtgctgcggc
gatgaaataattgaaaaaatagacgaacgtgtcgttggcagaacagctcttgacaacgtt
gtggatatcgttcatgacgatctgataataaagaggggagaacttattactcctaaaaaa
gctgagaagcttgttgaagcgggtattgataagattggtatcagaagtgttttgacgtgc
gagtcggaacacggcgtgtgcgcaaaatgttacggcgtaaatcccgctaccggagaacag
gttgagatgggcgaagcagtgggtattctggcggcgcagtcaatcggcgaacccggcaca
cagcttactctaaggacattccatatcggcggagccgcaagccgcgttgttcagcgttcg
gaagtttacgctgaaaacaatgggacagtcaattattataacttaaaaaccattcagaat
aaagatggcgaaactatagttttaagcagaaatgcggaacttgtatatacggaataccca
gtttaccgtaaacagatctatcagataccgtatggtgcggtaattaaaatttatgacggg
cagacagttgaaattagagttaatcccatcacaggaatgaagaaagacatattgatagca
aagtgggatccgcattcaaagccgattatttcggaatttgccggaacggtgaattttgtt
gatgtaaaagacggcgtaactcttcagagagaaaaatcaaaaataaccgggcagatagaa
agagttattattgagcattcttctgataggagaagtcccagaattgttgttaaaaaagac
gatggaagtgtcgtggaatatccgcttccggtggatacgactcttgttgtacgcgacaaa
gacagggttaaatccggcgatattttggcaaaaattccgcaggaaatttcaagaacaaaa
gatattactggcggtctaccgagagttgcggaactgtttgaaggaagaagacccagaaac
gtcgcggttgtttcagagatcgacggtatagttcatttagtcggacctactgtaaaaggt
aacgtaaaagttgaggttgaaaatcctgaaacaaaaatgaaaaagagttatcttgtgcgt
gcaggtcgacatcttgttgtttacgaaggtgatagagttaaagaaggtgaagcgctttcc
gacggagcgataaatccgcacgatattcttaaagttaaaggtcctaaagaagttcaagaa
tatcttgtcaacgaaattcagcaggtttacaggcttcagggtgtgtcaattaacgataaa
cacattgaaataatagtaagacagatgttatctaatgtaagaataactgattcaggagac
agccactaccttaacggtgaaattgtttcaaggtacaaatatgaaattgacagaaaagcc
attaaagggaaaaaaggaaaagctccaattgctcattctattcttttaggcataacaaaa
gcttcattgtcttcagattcatttatttctgccgcgtcttttcaggaaacaacgcgaatt
ttaactgaagctgctatttcagggcaggttgactatttgaaaggattaaaggagaatgtt
tctataggtcgactgatacctgcaggaacaggacttgcggcggttgatataggcgataac
aataaattttattcgagggaacaaaacgatgccaacaattaa
DBGET
integrated database retrieval system
