Candidatus Endomicrobiellum trichonymphae Rs-D17: RSTT_145
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Entry
RSTT_145 CDS
T05087
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eti
Candidatus Endomicrobiellum trichonymphae Rs-D17
Pathway
eti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSTT_145 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eti03019
]
RSTT_145 (pnp)
03016 Transfer RNA biogenesis [BR:
eti03016
]
RSTT_145 (pnp)
Enzymes [BR:
eti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RSTT_145 (pnp)
Messenger RNA biogenesis [BR:
eti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSTT_145 (pnp)
Transfer RNA biogenesis [BR:
eti03016
]
Prokaryotic type
tRNA degradation factors
RSTT_145 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
Par3_HAL_N_term
CvfB_2nd
S1_RRP5
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
BAV58725
LinkDB
All DBs
Position
249803..251872
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AA seq
689 aa
AA seq
DB search
MEYFKKEVDVAGKKFIVESGKVAKQAGGSCTVRIGETVVLVTVVSLKEPKVSIDFMPLTV
DYRERTYAAGKIPGGFFKRETRPRDGEVLVSRLIDRSVRPLFPEYYRNDTQISAVVLSHD
GENDSEMAAILGASIALYTSDLPFTTPIASVRIGKINGQLIINPLIAEQKLSDLDLVVSG
TEEALTMVEAGARELSEAEMLEALNLAGKTLKGICLFQKTLPAKTKIVVEQPQHNSLLKA
DIEAEAVSKAEMSVVIKEKCEREFFWDSFKKDISSRLLEKYPEELPSTIDAILEDIFYQK
ARDLVLNKKIRTDGRGFEEIRPITCETGVLPRVHGSSLFTRGQTQALVTVTLGSPCDMQV
IDELIVEYKERFMLHYNFPGFATGEPKRDRAVSRREIGHGNLAKKALRHIMPDGEDFGYA
VRIVSDILESNGSSSMASVCGGSLALFNAGVPVKSSCAGVSMGLMKEGGSYVILTDITGM
EDHLGDMDFKVAGTRKGITALQMDIKILGLTTEIVAQALEQAKRGRFFILDQMDAVVSAP
KNDLSNYAPRMITLTIPQNKIGELIGPGGKNIRKIQEDNSVKIDIEETGRVFISGVEPDG
VKSAKEYVECLTVEAEVGKIYKSRVTKIMAFGAFAEILPGKEGLIHISQLSNRHTKRVED
VVKEGDEVKVKVIEIDKQGRINLSIKAAL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
gtggaatattttaaaaaagaagttgatgttgctggaaaaaaatttattgttgaatccggt
aaagttgcgaaacaggctggcggttcttgtactgtaagaattggagagacagtagttttg
gttacggtggtttctttaaaagagcctaaagttagcatagattttatgcctttaacggta
gactacagggaaagaacttatgcagccggcaaaataccaggtggtttctttaaaagagaa
actagacctagagacggagaagtattggtaagcaggcttatagacagaagcgtcagacct
ctttttcctgaatattatagaaacgatactcagatatcggctgttgttctttcgcacgac
ggggagaatgattctgagatggcggctattttaggtgcttccattgcgttatacacctcc
gatttgccttttacgacgcctatagcgtctgtgagaataggcaagataaacggacagctt
attataaatccgcttattgctgaacaaaaattgagtgatttggatttggttgtcagtgga
actgaagaggctttgactatggttgaagctggtgcgcgagaactttcagaagctgaaatg
cttgaggctttaaatctggcgggaaagacgttaaaaggaatatgtttatttcagaagacg
cttcctgcaaaaacaaaaattgtggttgaacagcctcagcataactcgttattgaaagcg
gatattgaagctgaagcggtttcgaaagctgaaatgagcgtcgtaattaaagaaaaatgc
gaaagagaatttttctgggattcatttaaaaaagacatatcgtcgagacttctcgaaaag
tatccggaagaattgccgtcgacaatagatgcgatactggaagatattttctatcaaaaa
gcgagggatcttgttttaaataaaaaaatccgtacagatgggcggggttttgaagagata
agaccgataacttgtgaaaccggtgtgcttccgagggttcatggctccagcttatttaca
agggggcagacgcaggctttagtaactgtaacactggggagcccgtgtgatatgcaggtt
attgatgagcttatagtcgaatataaagaacgttttatgcttcattataatttccccggt
tttgcgacgggagaacctaaaagagatagagctgtaagcaggagggaaatcggacacggg
aatctagctaaaaaagctttaagacatattatgccggacggagaagatttcggttatgcc
gtaagaatagtctcggatatattagaatcaaacggttcttcgtcgatggcttcagtttgc
ggggggtcgcttgctttatttaatgccggagtacctgtaaaatcaagctgtgctggtgtc
tctatggggcttatgaaagagggcggcagttatgttattttaacggatattactggaatg
gaagatcatctcggagatatggattttaaagttgcaggtacaagaaaaggcattactgct
cttcaaatggatataaaaattttgggacttactactgaaattgtggctcaggctcttgaa
caggcaaagcgtggaagattttttatattagatcaaatggatgcggtggtttcagctcct
aaaaatgatctttcaaattatgcgcctcgtatgataactttgacaatacctcaaaataaa
ataggcgagcttataggtcccggcggaaaaaatataagaaaaattcaggaagataatagc
gttaaaatagatattgaagaaaccggcagggtttttatttccggggtagaacctgatggt
gttaagtctgcgaaggaatacgttgaatgtttgaccgttgaagccgaagtcgggaaaatt
tataaaagcagagttacaaaaataatggcgtttggcgcttttgccgaaattttgccgggc
aaagagggattgatacacatttcgcaactttcaaatcggcatacaaaaagagttgaagac
gttgtaaaagaaggcgacgaagttaaagttaaagtaattgaaattgataagcagggaaga
ataaatttaagcattaaagcggctttataa
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