Candidatus Endomicrobiellum trichonymphae Rs-D17: RSTT_296
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Entry
RSTT_296 CDS
T05087
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
eti
Candidatus Endomicrobiellum trichonymphae Rs-D17
Pathway
eti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RSTT_296 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eti03400
]
RSTT_296 (xseA)
Enzymes [BR:
eti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
RSTT_296 (xseA)
DNA repair and recombination proteins [BR:
eti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RSTT_296 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
DHQ_synthase
Motif
Other DBs
NCBI-ProteinID:
BAV58876
LinkDB
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Position
477937..479175
Genome browser
AA seq
412 aa
AA seq
DB search
MSEDLEFNCGGNSGDGRLIYTVTQISDEIKLILEDSYPTVWIRGEISNFKLYNFGHIYFN
IRDKNAQIRAVVFRNTGISLSFSPEDGMKVLVYGRVSSYPKRGDYQVIVSRIERYGRGEL
YEAYEKLKEKLKAEGFFDESAKKPIPDIVSRIGIVTSQDGAALCDILKVIDSLNANIEIL
IYPVRVQGKEAEKEIPQAIEYLNSRHKDLDVLLVGRGGGAVEDLWAFNTESVARAIFASE
IPIVSCVGHEVDFTIADFVADMRAPTPSAAAEMVLRSRNYIKTRIELLGESLSRAINFIL
GDRSAELDRLISSRALTKPRLIYEYKISYLDELGSRLLKSIGRLFESKSENLENVSRRLD
IVSPLSVLKRGFSICFDSNNEIIKDSKNVNVGDDISIKFASCSLNAQVKSYE
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggatttagagtttaattgcggcggcaacagcggcgatggccggcttatatat
actgttacgcagataagtgacgagataaaacttattcttgaagattcttatcccacagta
tggatacggggagaaatttcaaattttaaactctataatttcgggcacatatatttcaat
atcagagataaaaatgcgcagataagagcggtggtatttcgaaacacaggtataagttta
agtttttcacctgaagacgggatgaaagttttggtttacggcagagtgagttcttatcct
aaacgtggcgattatcaggtaattgtaagccgtatagaacggtatggtagaggtgagctg
tacgaagcgtatgagaaattaaaggaaaaattgaaagcggaaggattttttgatgaaagc
gcaaaaaaaccgataccggatattgtaagtagaataggaattgttacttcgcaagatggt
gccgcgctgtgcgatattttaaaagtaatagatagcttaaatgcaaacattgaaatttta
atatatcctgtgagagttcagggaaaggaagcagaaaaagaaattccgcaggcgatagaa
tatttaaattcccgtcataaagatttggatgttttacttgtaggcagaggcggtggtgcg
gtggaagatttgtgggctttcaatacggagtctgtggcaagagcaatttttgcttcagaa
ataccgatagtgtcgtgtgtaggacatgaagttgattttactatagcagacttcgttgca
gatatgagggctccgacaccgtctgcagcggccgaaatggttttaagaagtagaaattat
attaaaacccgcatagaacttttaggagaatctcttagcagggcaataaattttatattg
ggcgatcgtagcgcagaacttgacagactgatatcgtcaagagcattgacaaaaccgcgt
ctgatatatgaatataagatatcttatttggacgaactgggtagccgtcttttaaaaagt
atcggcagattgtttgaatcaaaatctgaaaatttagaaaacgtttcgcgcagattggat
attgtgtctccgctgtctgttttgaaaagaggtttttccatttgctttgacagcaataat
gaaattattaaagattcaaaaaacgttaatgtcggcgatgatattagtataaagtttgcg
tcatgtagtttgaatgcacaggtgaaaagctatgaataa
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