Candidatus Endomicrobiellum trichonymphae Rs-D17: RSTT_342
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Entry
RSTT_342 CDS
T05087
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
eti
Candidatus Endomicrobiellum trichonymphae Rs-D17
Pathway
eti03030
DNA replication
eti03430
Mismatch repair
eti03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSTT_342 (holA)
03430 Mismatch repair
RSTT_342 (holA)
03440 Homologous recombination
RSTT_342 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eti03032
]
RSTT_342 (holA)
03400 DNA repair and recombination proteins [BR:
eti03400
]
RSTT_342 (holA)
Enzymes [BR:
eti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RSTT_342 (holA)
DNA replication proteins [BR:
eti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RSTT_342 (holA)
DNA repair and recombination proteins [BR:
eti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RSTT_342 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
Transketolase_C_1
DNA_pol3_gamma3
DUF6470
Motif
Other DBs
NCBI-ProteinID:
BAV58922
LinkDB
All DBs
Position
545386..546405
Genome browser
AA seq
339 aa
AA seq
DB search
MNILKMHDFNKLISLQKISSVYLLAGEESYFINMCLNKIEKFTATDDLNRDVFYASESSA
DDILNALQTLPFLSEIRVVIVKGVNKMKAIDAERLTDYLSNTIETSCLILLYFDNYKKET
VAKRREFINKCIASKNCVSVNCRKQYENEVKEFIKNEFAQKGKEVSYDVISRIIEENGND
LLNISNEIEKLSLFAGKNKKDITQEDLEKISGYTKETSIYALSSEIEARDLKKTMFVLEK
LLNEREEPVIILSAISSVVRKMLNAKSMIEEQGLSTAEIASALRIHDFYAETFFTNLKKY
STDTLKESLKTILKTDTAIKTGSNDAASALEKTILSICK
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcttaaaaatgcatgattttaacaaattgatatctctccagaaaatatcatcc
gtttatttacttgcaggcgaagaatcttattttataaatatgtgtcttaataaaatagaa
aaattcaccgccacagacgatttaaacagagatgttttttacgcctcagaatcttcggca
gatgatattctaaatgctcttcagacacttccttttttaagcgagataagagtggttatc
gttaaaggtgtcaataagatgaaagcgattgatgccgagaggcttactgattatttgtca
aacactattgaaacgtcatgtcttatacttttgtactttgataattataagaaagaaaca
gtcgcaaaaaggagagaatttatcaataaatgcattgcttcaaaaaactgtgtttctgta
aactgtaggaaacaatatgaaaacgaagtaaaagaatttataaaaaatgaatttgcacag
aaaggcaaagaggtttcgtatgacgtaatttcaagaattattgaagaaaacggcaacgat
ttgttaaacatttcaaacgagatagaaaagttgtcattatttgcaggaaaaaataaaaaa
gatataacgcaagaggatttagaaaaaatcagcggatatacaaaagaaacaagtatatac
gctttgtcctctgaaatagaagcaagagatttaaaaaagactatgtttgttttagaaaaa
cttttaaatgaaagggaagaacccgtgataattctttccgcaatttcttcagtcgtaaga
aaaatgcttaatgcaaaaagcatgattgaagaacaaggactatctaccgctgaaattgct
tccgcactcagaatacatgatttttatgcagaaactttttttacaaatttaaaaaagtat
agtacagatacattgaaagaaagtctaaaaactatattaaaaaccgataccgcaatcaaa
accggaagtaatgacgcagcgtcggcattggagaaaaccatattatctatctgtaaataa
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