Candidatus Endomicrobiellum trichonymphae Rs-D17: RSTT_716
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Entry
RSTT_716 CDS
T05087
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eti
Candidatus Endomicrobiellum trichonymphae Rs-D17
Pathway
eti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSTT_716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eti03019
]
RSTT_716
03009 Ribosome biogenesis [BR:
eti03009
]
RSTT_716
Enzymes [BR:
eti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSTT_716
Messenger RNA biogenesis [BR:
eti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSTT_716
Ribosome biogenesis [BR:
eti03009
]
Prokaryotic type
rRNA helicases
RSTT_716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
FlgT_C
PG_binding_2
MRP-S33
Motif
Other DBs
NCBI-ProteinID:
BAV59296
LinkDB
All DBs
Position
1108462..1110093
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AA seq
543 aa
AA seq
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MTTLKFNELNLSSEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGI
PVLEKTNAKNKVVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIAL
SKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEGRQ
TVFFSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDIKEHQKLEALTRCLDM
YDPKLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIAT
DVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKACSFVSGKDIYKLRDIQR
YTKANIKRMQVPSLADVENTKEMIMLDKVKEVLKEKDLEKYAGMAESLISDEITSLDVAA
ALLKIMLASEKREQEQKADISENINKYSMTRLFINIGKKNGVRAGDFVGAITGETGINGS
LIGDIKILDAFSFVEVPQEYAVNIINALHSSNIKGKKVSVEPAKGNESTIGKSHPNFKNS
SKK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgacaacattaaaatttaatgaattaaatctatcgagcgaaatacttaaagcagttgaa
gatctgggctttgaagaggctactcctatccagagtctgtcaatccccaaaatgatgacc
ggcatagacattatagggcagtctcaaacgggcacggggaaaacagcagctttcggcatt
cctgttttagaaaaaaccaatgcaaaaaataaagtcgttcagtcagtaattttatgccct
accagagaacttgcaatacaagttgcggaagaattaaagctcttctcaaaatacaaaaaa
ggcattaacatagtgccggtttacggcgggcagcctattcagcggcagatgatagctctt
tcaaaaggagcacagattgtaataggaacgcccggcagagtcatagatcatctggaacgc
agaacattaaaactcgacactgcttcaatcgtaattttagacgaagccgacgaaatgctc
gacatgggtttcagagacgatatagaattaatccttaaaagcattcctgaaggaaggcaa
actgtatttttttcagctacgatgcctaaagaatttctatcccttactaaaaaataccag
cacagtcccgaaaccataaaagtcgtaagcgaaaaattaacggttccttctattgaacag
tattattttgacataaaagaacaccaaaaacttgaggctctcacaagatgcctcgatatg
tatgatcccaaactttcgcttgttttctgcaataccaagaaaagagtggacgaagttacc
tcttcacttcaggcaagaggctattatgccgacgcaattcacggagatatgaatcagtcc
caaagaaacagagtaatgtcaaaattcagaaacggttccatagagcttctcatagctacc
gatgtcgcggcaagaggcatagacgttgatggcatagatatggtttttaattttgatgtt
cccaaagacgatgaagactatgtacatagaatcggaagaaccggcagagccggaaaagcc
ggcaaagcgtgcagctttgtttcaggaaaagatatttataaattaagagatatacaaaga
tatacgaaagcaaatatcaaaagaatgcaagttccgtcgcttgccgatgttgaaaataca
aaagaaatgataatgcttgataaagtaaaagaagttttaaaagaaaaagaccttgaaaaa
tacgccggaatggcagaatccctaatttcagacgaaattacttcgttagacgttgcagca
gctctcttaaaaattatgcttgcttcagaaaaaagagagcaggaacaaaaagccgatatt
tcggaaaacataaacaaatacagcatgacaagattgtttatcaacataggtaaaaaaaat
ggcgtaagagccggagactttgtaggcgctattacgggtgaaacaggaataaacggcagt
ctgataggggacattaaaattttagacgcattttcatttgttgaagttccgcaggaatat
gctgtcaatataattaacgctttgcattcaagcaatattaaaggaaaaaaagtttccgtt
gaacctgctaaaggcaatgaaagcactatcggcaaaagtcatccaaattttaaaaattct
tcaaaaaaataa
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