Empidonax traillii (willow flycatcher): 114054660
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Entry
114054660 CDS
T05887
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etl03041
]
114054660 (YTHDC2)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114054660 (YTHDC2)
Spliceosome [BR:
etl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114054660 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
AAA_19
HA2_N
Ank_2
AAA_22
nSTAND3
ATPase
PhoH
Ank_4
Ank
AAA_16
ResIII
AAA_7
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
114054660
NCBI-ProteinID:
XP_027733815
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
MSRHRRVPRRQLGGAAGGSAAAAGAVRARGEGLRDVRVDEEVEMAVQLALERFRSGEEAE
MEFPSSFTSTERAFVHQLCQSLGLVSKSKGKGANRYLTVRKKDVSELTHAIMTCDLALRT
KQAVRSLIQSFPVTNKERTELLPKTERGNTCAVESDNKEVNKTSGRLNDGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKDNKIVLVIGETGSGKTTQIPQFILDDCYKNGTPCRV
FCTQPRRLAAVAAAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNSLRLIISSAALDANLFIRYFGSC
PVINIQERPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQKNTLTEWCSAQENTGK
LKPQRQKSVPRATEEYHVLDDGGDTVFNQVTEKDVNCLEPWLVKEMDSCLSDIWLHKDID
SFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCKSSNGWMA
VDWARRFGQTEVVDLLESYSASFGFGNLDESSLVQTSGTDLSAEDRELLSAYHHSFDDEK
VDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVSLRDRIVFDDRRFADNAHRYQVFMLHS
SVQTLDQKKVLESPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKERSFDALSHVAML
KTAWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQKMLEFQTPELLRMPLQEICLYTKLL
APPNCPIVDFLMKAPDPPPAVVVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGK
MVLYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNT
NSENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLSQPQYKKIPLANGQ
AAAIQALPTDWLIYDEVTRAHKIANIRCCSVVTPVTVSLFCGPARLPSNALQASSSFRGS
GVSNDSSDSEMEDKTIANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSK
PWSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASAWRSTNSKKGSA
EAEFSDSSNAEKVSVKPTPPTLHQPKKYKEKDILHSKRSSDDRSAQSSVKPADSSSYPSP
CASPSSPISGKGSKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGAF
WESNVVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVEWIRKESIPFQFA
HHLLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLT
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggagggtgccgcggcgacagctcggcggggccgcggggggctcggct
gcggcggcgggcgcggtgcgggcccggggcgaggggctgagggacgtccgcgtggacgag
gaggtggagatggcggtgcagctcgccctggagcggttccgcagcggggaggaggcggag
atggaatttccttctagtttcactagtactgaaagagcatttgttcaccagctctgtcag
tctcttggactggtatctaaaagtaaaggaaaaggagcaaatcgatacctgactgtaagg
aaaaaggatgtatcagaactaacacatgcaataatgacttgtgacttggctctccgtaca
aaacaggcagttcggagtttaattcagagttttcccgtcacaaataaagaacgcacagaa
cttctgccgaagacagagcgaggaaacacatgtgctgttgaatctgacaacaaagaagtg
aacaagacaagtggacgacttaatgatggtatcccccaggttccagtgaaaagaggggaa
tcagagtttgattccttcaggcagtcattaccagtttttgaaaaacaggaggaaattgtc
aaaataataaaggacaataaaattgttttggttattggagagactggatcaggaaaaact
actcaaatccctcagtttattcttgacgactgttacaaaaatggaaccccgtgtcgtgta
ttttgcactcagccaagacgtttggcagctgttgctgcagctgaaagagtggcagcagaa
agaagagaaaagattggccagacaattggttatcagatccgactggaaagcagggtttct
ccaaagacactggtaacgttttgcactaatgacatgctgcttcgcacactgatggcagga
gacagtaccttgtcaactgtgacacatgttattgtggatgaagtacatgaaagggataga
ttcagtgacttcttgttaataaaactgagagatgtattgcaaaaccagaatagtttgaga
ttaattatttctagtgctgctctagatgcaaatctttttattaggtattttggaagttgc
cccgtcataaacatccaagaaagaccttttgaagttaaggagatgtttctggaggacatt
ttacgaagcactgggtatacaaataaagagatggtcaagtacaaaaaagagaagcagcaa
gaagagaaacagaaaaacactctcactgagtggtgttctgctcaggaaaatactggcaaa
ctgaagcctcagagacaaaaatctgtcccaagggcaactgaggagtatcatgtgttggat
gatggtggtgacacagtttttaatcaagtaactgaaaaagatgtgaattgccttgaaccg
tggctagtaaaggaaatggattcttgtctttctgacatctggttgcacaaagatattgat
tcctttgctcaggtgtttcatctcattttaactgaaaatgtcagcgttgattacaggcat
agtgaaaccagcgcgactgctctaatgattgcttcagggagaggctttttgagtcaagtg
gaacaactgatcagtatgggagcaagtatccactgcaaatcatccaatggctggatggct
gttgactgggctaggcgctttggacagacagaggttgttgacctgttggaatcctacagt
gcttcatttgggtttggaaatctggatgaaagttccctggtccaaacaagcggtactgac
cttagtgcagaggacagagagctattgtcagcttatcatcacagttttgatgatgaaaaa
gtggatctggatctgattatgcacttactttataacatctgccatagttgtgatgcagga
gcaattttaatatttcttcctggatatgatgagatagtgagtctgagggaccgtattgtt
tttgatgacaggaggtttgctgataatgctcacagataccaagttttcatgcttcattca
agtgtgcagactttggatcagaagaaagtgcttgaaagtccaccttctggcatccgcaaa
ataattctttctactaatattgcagaaaccagcataacagtcaatgatgttgtatttgtt
attgactctggcaaggtgaaagagaggtcttttgatgcactgagtcatgttgcaatgcta
aaaacagcatggatttcgaaagcaagtgctatccagagaaaaggcagggctgggcgctgt
caacctggagtttgttttcgtctgttcagcaggctccgatttcagaagatgttggaattt
cagactccagagcttctaagaatgccacttcaggagatttgtttatacacaaaactgctg
gctccacctaattgtccaattgtagactttcttatgaaagctcctgatccgccacctgct
gtagttgtgagaaatgctgtgcatatgcttaagacaatagatgccatggacccttgggaa
gatctcaccgaacttggttatcatctcactgaattaccagtagagccacaccttggtaaa
atggtgttgtatgcagttgttttgaagtgcctggaccctgttcttaccattgcctgtgct
ctggcctgtcaggacccttttgtcctgcccactctggcctctcagaagcgtgcagccatg
ctctgcaggaaacgctttgctgcagggaccttcagtgaccacatggcccttctcagggct
ttccaggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaac
ttcctgtctcaagccacgatggaaatcatcgtaggaatgagaacacagttgcttggccaa
ctcagagcctcgggttttgttagagccagaggaggagctgatattagagatgttaatact
aactctgagaactgggctgtaattaaagctgccttggtggccgggatgtatcccaatctt
gttcatgtagacagagaaagcttggttttaactgaaccaaaggagaagaaagtgcgattt
catcctacttctgttcttagtcagcctcagtataaaaagattcccctagcaaatggacaa
gctgcagccattcaggcactccctacagactggcttatatatgatgaagtgacaagagct
cacaagatagcaaacatcagatgctgctctgttgtaacacctgtcactgtgtcactcttc
tgtggaccagctaggttgccaagtaatgccttgcaggcatcatcgtccttccgagggagt
ggggtatctaatgacagcagtgacagtgagatggaggacaaaacaattgctaatttggca
ctactgaagctggatgaatggctccatctcaaattggaccctgaagctgctggaatgctc
ttgcaactcagacagaagtggcacagtttattcctgcgtcgcatgcgagctccttctaaa
ccgtggtctcaagttgatgaaacaactgtaagagcaattacagctgttttaagtgctgag
gaacagtctgcaggtttgcagcagccttcaggaattggtcagagaccaaggcctgtgact
tgtgaagagcttcctctggcatctgcatggaggtcaaccaacagcaaaaaaggatcagca
gaagctgaattctctgactcctctaatgctgaaaaagtttcagtgaaacctacacctccc
acacttcaccagccaaagaagtacaaagagaaagacattttgcactccaaacgatcttca
gacgacaggtcagctcagtcatcagtgaagcctgcagacagcagcagctatcccagccct
tgtgctagtccttcttctccaatatctggaaagggttccaaatctccttcgccaagacaa
aatatgccagttcggtactttataatgaaaagtagcaacttgcaaaacattgatatttct
cagcagaagggtatatggtccactacgccaagtaatgaacgaaaactgaacggagccttt
tgggagagcaacgtggtttacttaatattttctgttcaagggtctggatgctttcagggt
tttgctagaatgggttcagcgattgggtgtgagaaaagtcaggactggggatctgctggt
tttggaggtgtttttaaagtggagtggatcagaaaagaaagcattccttttcagtttgca
caccatttactcaacccttggaatgacagtaagaaagtacaaataagcagagatggccag
gaactcgaaccacaagttggggaacagttgctgcagctttgggaccgtattcctttggca
ggaaaaaaactgacttga
DBGET
integrated database retrieval system
