Empidonax traillii (willow flycatcher): 114054817
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Entry
114054817 CDS
T05887
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114054817 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
etl04131
]
114054817 (VPS8)
Membrane trafficking [BR:
etl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
114054817 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
Beta-prop_WDR3_1st
WDR55
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
114054817
NCBI-ProteinID:
XP_027734110
LinkDB
All DBs
Position
Unknown
AA seq
1395 aa
AA seq
DB search
MAAVPDGAEPEPPPEPPPEPPVHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESI
LNETDDEEESFVLEDPFLLSVDNADAHSYDTSSVASSDSGDRSHLKRKKKLPDSLSLHGS
VIRLSLLKGISAQVVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLCLG
STAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIK
FTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHP
ITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQSSVNPMLAF
CRGDVVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSAEKLHVIDRQT
QEELETIEIPEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSYGGQIFYLGTKS
VHVMTLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTTKRKAVIADRMVE
ILLHYADRTLKKCPDQGKIQIMEQHFQDVVPVIVDYCLLLQRMDLLFNQIYDKMSENSVA
KGIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVL
LCWENRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVIMGNKLLVYISC
CLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNV
LALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFV
NRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFFQICEF
MYERQLRYDRIIGCYLRDPMRKEEVFNYIHNILSMPGYSAEEKQSVWQKALDHIEELLVL
SPGKAAELAAIHFSEQIESIISTLQDQFLLFQFLRSLLDPREGINQELIHLPPSITEQFI
ELLCHFSPDQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERL
QSELLMLTQEDESPAEPSLLENIEDTLMKTIALCQRNSHSLDQQQREALWFPLLEAMMSP
QKSSGSSQCRYSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGM
LDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADE
IIVFSCGHLYHSLCLLSKECGTVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGTGASLA
QTSSESLLDPQQIQAFDQLCRLNRGTSRLALLTELARSGEKHGLLSTSHGDPASSSVFQN
ETFQLHLTPPPLAED
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtcccggacggagcggagcccgagccgcccccggagccgcccccggagccg
cccgtgcaccggctcagcgtggccgagctcgaccgtgagctggactcccgcagcgagctg
atcgatgacaaagaattcgacatccctcaggtggataccccccccacgctggagagcatc
ctgaatgagactgatgatgaagaggagtctttcgttctggaggatccctttctcctgagc
gtcgataacgcggacgcgcactcctacgacacgtcctccgtggccagctctgacagcggg
gaccgctcacacctcaagaggaagaaaaagctcccagattctctctcactccatggatca
gtgatccggctctctctcctgaagggaatttctgcccaagtagtgtctgcagcagacaag
gtggatgctggcttgcccactgcaattgcagcatcaaatctgatagcagtggggacctcc
catgggctggcactgatatttggaaaagatcagaaccaggccctgaggctgtgcctgggc
agcaccgctgtgggggcccagtatggggccatctctgccctcagcatcaacaacgactgt
tccaggctcctgtgtggctttgccaagggacagatcaccatgtgggacctggccagtggg
aagctgcttcgctccataacagatgctcacccaccaggaacagccattctgcacatcaag
tttacagatgacccgacacttgcgatttgcaacgacagcggaggctccgtgtttgaactg
tccttcaagagggttatgggagtgaggacctgtgaatctcggtgtctcttcagtggctcc
aagggggaagtttgctgtattgagcctttacatgcaaaagttgatctgagagaccatcct
atcacccagtactcactgctggccatggcctccctcacaaagattctggttattggcctg
aagccatctctgaaggtgtggatgacttttccctacggtcggatggacccctcgagtgtc
cctctcctggcctggcactttgtggctgtgcagagctctgtgaaccccatgctggccttc
tgtcgaggagacgtcgtgcatttcctgctggtcaagagagatgatacgggtgcaatacat
gtcactaagcagaggcagcttcatctgcattatgatctcatcaactttacctggatcaac
tcccgcaccgcggtgctgctggacagtgcggagaagctgcatgtcatagaccggcagacc
caggaggagctggagaccatcgagatcccagaggtgcagctggtctacaacagcagccac
ttcaaatccctggccacggggggcaacgtcagtgaggccctggcactggtgggagagaag
gcttgttaccagtccatcagcagctatggtggccagatcttttaccttggaactaagtct
gttcacgtcatgacattgagaagctggagagagagagttgaccaccttctgaaacaagag
cgtctcacagatgccctggctttagcttggtccttctatgaaggtaaagcaaaggctgta
gtaggcctgactggggacacgaccaagaggaaggcagtcattgcagacaggatggttgaa
atccttctccattacgctgatcggactttgaagaaatgtcctgaccaagggaaaatccag
attatggagcagcactttcaggacgtggtgcccgtcatcgtcgattactgtctcctgctg
cagcgcatggatctattatttaaccagatatatgataagatgagtgagaattctgtagcc
aaaggcatctttctggagtgcttggagccatatatcttaagcgataagctgatgggaatc
acagctcaggtgatgaaagacttgctgcttcacttccaagacaagaacagattggaaaac
ttggaagcctgcattgtgcatatggatatcaccagcttagacatccagcaggttgttctc
ctgtgctgggagaaccgtctgtatgatgccatgatctatgtttacaacagtgggatgaac
gacttcatcagccccatggagaaactcttcaaagtcattgcacctccactgaatgctggg
aaatctctcacagatgaacaggtgataatgggcaacaagctgcttgtgtatataagctgc
tgcttggcaggccgtgcatatccattgggagatattcctgaagatctggtacctctggtg
aaaaatcaggtgtttgagttcctcatccggctgcactcggctgaggggtccgtggatgag
gaggtgtatccctatgtccggaccttgctgcacttcgacacgcgggaattcctcaatgtc
ctggctctgacttttgaagactttaagaatgacaagcaagctgtggaatatcaacagaga
attgtggacattcttctgaaggtcatggtggagaactctgacttcaccccatcccaggtt
ggctgtctctttaccttcctggcccgtcagctcgccaagcccaacaacactttgtttgtc
aacaggacactttttgaccaggtcctggagttcctgtgcagtccagatgacgactcccgc
cattccgagaggcagcaggtcctgttggagctgctccaggcaggagggatagtgcagttt
gaagagagccgtcttatccaaatggcagagaaagctgagttcttccagatctgcgagttc
atgtacgagcggcagcttcgctatgacagaatcatcggttgttacctgcgggaccccatg
agaaaggaagaagttttcaactacattcacaacatcctgtccatgcctggctacagtgct
gaggaaaagcagtcggtgtggcagaaagctctggaccacatagaggagctgctggtgctg
agcccagggaaggcagctgagctggcagccatccacttcagtgagcagattgagagcatc
atctccactctccaggaccagttcttgctattccagttcctgaggagtctcctcgatcca
agagaaggcattaaccaagagctgatacatttaccaccctccatcactgagcagttcatc
gagctgctgtgccatttcagcccagaccaggtcctggagacactcaaagttctggaatac
tgcagactggaagaaaccatccagataacccagaaacatcagctccatgaagcttcttcg
tatttactggagaagaagggagatatccacggtgcctttttggttatgcttgagcgattg
cagagcgagttgctgatgctcactcaagaggatgaaagcccagctgaaccctccttgcta
gaaaacattgaagataccttaatgaaaacaattgccctttgccagaggaattcacacagt
ttagaccagcaacagagggaggccctgtggtttcccctgctggaggccatgatgtcccca
cagaaatcctctggttcttcacagtgtcgatactctgaatctttgaagagtttgacaatg
caggtgctgaacaacatggctgcgttcattgctctgccctccatcctgcagagaatcctc
caggatccagtttatggaaaagggaaacttggagaaattcaagggcttgtcctgggaatg
ctggacacctttaactatgaacagacccttctagagacaactacaaaccttttaaaccac
gatctccactggtccctgtgtaacctgagagcctctgtcacgagggggctcaccccaaag
caggattactgctgcatctgtctccagcagtacaagaggaggcaagaaactgctgatgaa
atcatagttttcagctgtggccacctgtaccattccctgtgcctgctgagcaaggagtgt
gggacagtcaccaagggcctcatgaggtggatgtgctataagtgcaactcgagtaacaag
ggaggaaagctcagtgagaacttctcagagctgaaaaaaggaactggagcatccctggca
cagacgagttcagagtctctgttggatcctcagcaaatccaggcttttgaccagctgtgc
cggctgaaccgaggcacctcccgcttggctctgctgacggagctggcccgcagtggtgag
aaacacgggctgctcagcacttcccacggggacccagcctccagcagtgtcttccagaac
gagaccttccagctccacctgaccccccctccgctggccgaggactag
DBGET
integrated database retrieval system
