Empidonax traillii (willow flycatcher): 114056559
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Entry
114056559 CDS
T05887
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114056559 (FOCAD)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114056559 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
BCLP
MOM1
Motif
Other DBs
NCBI-GeneID:
114056559
NCBI-ProteinID:
XP_027737651
LinkDB
All DBs
Position
Unknown
AA seq
1803 aa
AA seq
DB search
MLDDIKKRFEFPNAVVQSQAVGHLIAAILKEKVSSEKIRQASAQTPALNLLWEKCCSENV
ALRTACSEGLVALVAEKHAELDYVLHGALNLIPSARNVHGLVKTICKLLQIQAIQLGKDG
DESVWNLYGIRSVPHPLITVLENRPECWPVLLQQITLFFHQCPERAASSCVGIMAPFVRY
LYCEPSQLRAYAELRTGLLKILLQPRGPKHEGTPSMLECEILQLLCDLIPHLQLKDLLQV
TEALSYLQELFLSLLRYPVFWKVQLSQFCVQLLCFCEVCLNVTGECSSLISLIEDSFELL
KEVFPVNQCIIGLALLLLQTPESQQKPVLSLAHKVLSCSETKNISTTALTLVMPVLQILS
STTVGDCLLGDDSGTTRQQLAVNLLGILQEEGLKDKQELVSCKLLFPITSSYSSLYTTWK
IIELMKEKSAVTKWLSSVKSLLPVTTQVPAHVFLLLAYLLIQENGDTLRDVLQTTTEVAK
ADCSQVPNLIPVLIFKLGRPLEPVLYRDILYTLPTLGVHKVCVAQILRAIHMLGSTPKLR
AIASRLMTSLWERQDRIYPELQKFLVMSDMPSVSVDKDAQWEKLIAKAACIRDICRQRPY
QHGADMLAAISQVLNECTKPDQASPAAIVLQGLQALCEAEVVCIRSTWNALSPKLSCDTR
PLILKALNELFALVPSLTVNTNEFEKFKAQVISFLWNNTQNEDALVAISAYKSLSSFGSE
EHTILHLPEQARPEVYLLEDTDMNEDEEEQEANLFVPGSSYIKLLSLTPASVLGAFEEFA
TSLVKQEMTNMPRGVYHSALRGGTMRSDQGKTVAGVPNFLLKMYERNRQPGMTPGLAAGM
LLCYDLPVHMGKDGKPINRFLASRGRSFQQMLVALIHEVNIQPSEWHSSILLPQSWLGFM
SRTYSAVLQGRQAELEMQLKHGKEDPEEVQYKQFTAWLWVRDMLTDVIKGASKDSPVVKG
NSIFALTSLAVAVAKYESSLSSDTEGMPETEPDFIPMKHWISMVTETLLSIVNSRYHPKG
QVFPWFYQKSYSGENTASIIARSCAATALSLLVPVFIMSWKEKVEEVLNMLTDRLPGKPN
ADESQAVQIHMGLGLGMFIARLYDEKVSDIPGQQMNLVLMKSLDMLEDCCFDTNLEYNTG
CILGVGLVLSFMSHSSQTESRVHVSASLRKLCKCLDKSEDQSRSVQEVLAYSVACSCVSA
FSVGIIEAAEAEEVMSKLRTLAENNQQTYSLALALGAIVHGLSSCGHGKAEDLSNRLMPT
WIKIVLAEGSPTMERLAAVSGLVALVGSEGGMIQLKSESVQSSQFQSKLNEVIRALTQII
SFSGQVGLQTNAARLLGCLHMSCLSSTQNRASVPPDFSYLPVNSFIRAAIDFAIESGKKG
PEAVPAELVKVALAPIALVGESHQYPPVNWASVLSPLMRLNFGDEVKHLCLQLAVTQAQS
SKNAAMLLGMWVAPPLVYSLCVKTQKYLFKSLSLWMQHVAEDKLQSFIEVLLIQQFEVKN
RTKPPEICQCILHGLIQAMKLPNPAQFCWTFLCQAVEKIYEFLPNEVQRHELEMYIDVAK
CISEMADSEIDRIVQISKNNIEKATFTKVYLVSQGRLSLMNLSAVIGTVAGYHQKENILW
MLLYSLYHARIVRHENTGVMKRVDWLLDLMGYISNVAYKSIPLQNINLKECIDLLLWLFA
ASVVAWADHGAPLLLGLSADWSPWKHHTILPDLSEDHIGKHPTEKFAVQETLTLFPSSIS
LLLAKEPWKEQTQKFIDWLINMMESPKEALSKSSMELLKVTLLALRSLAEFKKKAVWTKA
YGW
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgctggatgacatcaagaaacgatttgaatttcctaatgcagttgttcagtcacaggca
gtgggccatttgattgctgcaatactcaaagaaaaagtttcttcagagaagatcagacag
gcttctgcccagacccctgctctgaacctgctctgggagaagtgctgcagtgagaatgtt
gccttgcgaacagcctgctctgagggattggtggcacttgttgcagagaaacatgctgag
cttgactacgttcttcatggagctctcaacctaattccctcagcaagaaatgttcatggt
ttagtaaaaactatttgcaagttactacaaattcaagctattcaactgggaaaagacgga
gatgagtctgtttggaatctgtatggaatcaggagcgttccccatcccttaatcactgtc
cttgaaaatcgacctgaatgctggccagttctactacagcagataacattatttttccat
cagtgtccagagagggcagcgagttcatgtgttggcataatggctccatttgtaagatac
ctgtattgtgaaccatctcagttacgggcatatgctgaactgcgaacaggtttacttaag
atcttacttcagcctcgggggccaaagcatgaaggcacaccttccatgctggaatgtgaa
attcttcaacttttgtgtgatttgattccacaccttcagcttaaagacttattgcaagtc
acagaagccttgtcttacctgcaagagctattcctcagcctgctgcgctatcctgtgttt
tggaaagttcagttatctcagttttgtgtgcaactgttatgcttctgtgaagtgtgttta
aatgtgacaggagaatgctcatctttgatctccttaatagaggacagctttgagctctta
aaagaggtgtttccagtcaaccagtgcataattgggctagcacttctgctgctgcaaaca
ccagaaagtcagcaaaagcctgtcttgagtctagcccataaggtcctttcatgttcagaa
accaagaacatctcaaccacagcccttactttggtgatgcctgtgctacagatcttatct
tctacaacagttggagactgccttttaggggatgactctggaactaccaggcagcagctg
gctgtaaatcttttgggaatattgcaggaggaaggtctgaaggataaacaggaattggtg
tcctgcaaactccttttccctataaccagctcttacagttcattgtacacaacctggaag
atcatagagctcatgaaagagaagtccgcagttactaaatggttatcttcagtgaaatca
ctgctgcctgttaccacacaagtccctgcccatgtttttcttttgttggcttatctactg
atccaagaaaatggagacactcttcgtgatgtgcttcagactactacagaagtagccaag
gctgattgttctcaggttccaaatcttatcccagttctgatatttaaattgggaagacct
ttggagcctgtactttacagggatatattgtatacgttgcctacacttggtgtacacaag
gtttgtgtagctcagattctgcgtgccatacacatgctggggagcacaccaaagctcaga
gcaattgcttcacggctgatgacgtcattgtgggaaagacaggatcggatttacccagag
ttacagaagttcttggtgatgtccgatatgccctctgtgtctgttgacaaagatgctcag
tgggaaaagctgattgctaaagctgcttgtataagagatatatgtaggcagagaccatat
cagcatggagcagacatgttggctgcaatttcccaggtattaaatgaatgcacgaaacct
gatcaagcttcacccgctgccatagtactgcagggtctccaggcactttgtgaggctgag
gttgtttgcatccgttctacatggaatgcactgtcaccaaagctgagttgtgatacaaga
cccctcattttaaaagctctgaatgaattgtttgccctggttccctcattaacagtgaat
acaaatgaatttgagaaattcaaagcccaagttatcagcttcctatggaacaacacacag
aacgaggatgctctggtagcaatttcagcctataaatcgctgtcatcatttggctctgaa
gaacatacaattcttcatcttcctgaacaggcacgaccagaagtttacttgctggaggac
acagacatgaatgaagatgaagaggagcaggaagcaaatctttttgttccgggttcttca
tacatcaagctgttgtctctaacaccagcttctgttttaggagcatttgaagagtttgca
acatcattggtgaaacaggagatgaccaacatgccccgtggtgtgtatcattctgccttg
agaggagggaccatgcgctcagaccaggggaagacggtggcaggtgttccaaacttcttg
ctgaaaatgtatgagaggaacagacaaccaggcatgacaccaggccttgcagctggcatg
ttgctgtgttacgaccttccagtccatatgggcaaagatggcaagcctattaatagattt
cttgctagcagagggcgtagtttccagcaaatgttggtcgccctcattcatgaggttaac
attcaaccttctgaatggcactcctccatactgctaccacagtcctggttaggatttatg
agtcgaacctacagtgcagtcctgcaggggaggcaggcagagctggagatgcagttaaaa
catggaaaagaggatcctgaagaggtgcagtacaaacagtttacagcctggctgtgggtc
agagatatgttgaccgatgtcatcaaaggtgcttccaaagacagtccagtggtgaaagga
aactctatttttgcgttaactagtcttgcagttgctgtagctaaatatgaaagcagcctt
tcctcagacactgaagggatgcctgagactgaaccagattttattcccatgaaacactgg
atttctatggtcacagagacccttttgagtattgtgaatagtcgctaccatcctaaaggt
caagtcttcccatggttctaccagaaatcctattcaggtgaaaatactgctagtattata
gctcgttcctgtgcagccacagctttgtctctcctggtgccagtttttatcatgtcatgg
aaggagaaggttgaggaggtcctgaatatgttaactgacaggttacctgggaaaccaaat
gctgatgagtctcaagctgttcaaatccacatgggtcttggtttggggatgtttatcgca
cgtttgtacgatgaaaaagtcagtgatatacctggtcaacagatgaacttggttctgatg
aagtctctggatatgctggaggactgctgctttgacaccaatctggagtacaacactgga
tgtattttaggagtaggacttgttctttcattcatgagccacagtagccaaacagaatca
cgagtgcatgtttccgcttcattgcgaaaactctgcaaatgcctggacaaaagtgaggac
caaagcagatcagtccaggaggtgcttgcctattcagtggcctgttcctgtgtctctgcc
ttcagtgttggaatcatagaagcagctgaggctgaggaagtcatgagcaagctacggacc
ttagcagaaaataatcagcagacctacagtttagctttagctttaggtgcaattgtacat
ggattgtcatcttgtggtcatgggaaagctgaagatctgagtaacagactaatgccaacc
tggataaaaattgtgcttgcagagggttctccaacaatggagcgtctggctgccgtcagt
gggctggttgcactggtaggctctgaaggaggcatgatacagctgaaatctgagagcgtg
cagtcctcacagtttcaaagtaagctgaatgaagtcatcagagcccttacacagataatc
agtttctcaggacaagttggccttcagacaaatgcagcaagacttttgggatgtcttcac
atgtcctgtttgtcttctacccagaacagggcatctgttcctccagattttagctactta
cctgtaaacagctttatcagggcagccattgactttgccattgaaagtggaaagaaaggt
cctgaagctgtcccagctgagctggtgaaagtagcactggcacccattgcattagttgga
gaaagccatcagtatccacctgtaaactgggcatcagtgctttctcctttgatgaggcta
aactttggtgatgaggtaaaacatctctgccttcaactggctgtgacacaggcccagtca
tctaaaaatgcagcaatgcttttaggcatgtgggtggcacctcctcttgtctacagtctc
tgtgtgaaaactcagaagtaccttttcaagtccctgtccctgtggatgcaacatgttgca
gaagacaaactgcagtcttttatagaagtgcttctgatacaacaatttgaagtgaagaac
cgcacaaaacctccagaaatttgccagtgcattctacatgggcttatccaggcaatgaaa
cttcccaaccctgcccagttttgctggacctttctgtgccaggctgtggagaaaatatat
gagtttcttccaaatgaggttcagagacatgaactggagatgtatattgatgtagcaaaa
tgtatctcagaaatggctgattcagagattgatcgcattgtccagatctcgaagaacaat
atagagaaggccacattcacgaaagtgtatttggtttcccaaggcagactgtctctgatg
aacttgagtgcagtgattggtactgtggcaggatatcaccagaaagaaaatattttatgg
atgctcttgtatagtttgtatcatgctcgtattgtgagacatgaaaacacaggagttatg
aaaagagtggactggctgctagacctgatgggctacatcagcaatgtagcatacaagtca
atacccttacaaaatatcaatcttaaagagtgcatagatcttctcctgtggctgtttgca
gcttcagtggtggcctgggctgaccatggtgcaccattattgctcggcctcagtgctgac
tggtcaccatggaagcaccacacgatattgccggacttatctgaggatcacattggcaag
caccctactgaaaagtttgctgtacaagagactctcactctctttccaagcagcatttcc
cttttgctggctaaagagccttggaaagaacaaacacagaagtttattgactggctgatc
aatatgatggaaagtcctaaggaagcattatcaaagtcttccatggaactgctgaaagtt
acgcttctggccttgagatctcttgcagagttcaagaagaaagcagtatggactaaagct
tatgggtggtag
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integrated database retrieval system
