Empidonax traillii (willow flycatcher): 114057786
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Entry
114057786 CDS
T05887
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
etl03037
]
114057786 (IFT88)
Cilium and associated proteins [BR:
etl03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
114057786 (IFT88)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_7
TPR_19
TPR_14
TPR_6
TPR_16
TPR_8
ANAPC3
ARM_TT21_4th
TPR_11
TPR_17
TPR_10
TPR-S
TPR_9
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
NatA_aux_su
HEAT_Nup120
HAT_PRP39_C
ARM_TT21_2nd
DUF2989
Coatomer_E
TPR_21
ARM_TT21_C
DUF2225
MIT
DUF6584
Motif
Other DBs
NCBI-GeneID:
114057786
NCBI-ProteinID:
XP_027740280
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MVLFNTVYRKMMQNVHLAPENDEDDLYSGYNDYNPMFDTEDLENDTAFQQAARTSHGRRP
PVTAKIPSSASSRPLATGFGPKATLPSSMGRPMTGGIQFEDGVSRPMTAVQAAGYTKTAM
RGSSFDPLGQARGPASPLEKKNSDSPEEKLKQLEKKVNELVEESCVANNCGDLKLALEKA
KEAGRQERELLRQREQITPPENINLDLTYSVLLNLASQYAANEMYAEALTTYQVIVKNKM
FTNGGILKVNMGNIYLKQRNYSKAIKFYRMALDQITSAHKEMRMKIMENIGVAFIKTGQF
VDAVSSFEDIMSISPNLKAGFNLILCYFAIGDGEQMKKAFKKLIAVPLEVDFDDKYISLN
DDLHTNLLLEAIKNDSISQMERERKSMAEEYIMTAAKLIAPVIETSFAVGYDWCVDAVKA
SHYVELANDLEINKATTYLRQQNFNQALETLKMFEKKESRVKSAAATNLSFLYYLGNELA
QATNYADLAINSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSLCTEALYNLGLA
YKKLNRMDEALDFLLKLHAILPNSAQVLYQIASIYEIMEDPNQAIEWLLQLISVVPTDPY
VLSKLGKLYDNEGDKSQAFHYYYESYRYFPSNIEVIEWLGAYCIDTQFCEKAIEYFERAA
LILPTQVKWQLMVASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLVRLCTDMGLKEVQ
EYVTKLKKVEKLKEIREQRIKSGRDGSARNRREGGGDSGGTKGERLSAKLKALPGTNEPY
ESRSSKEIDASYTDPLGPQAERPRTAARKRTEEDDFADEELGDDLLPE
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggtgctatttaatactgtttataggaaaatgatgcaaaatgtgcatctggctcctgag
aacgatgaagatgatctctattctggctacaatgattataatcccatgtttgatacagag
gatttagaaaatgatacagcttttcaacaggcagcaagaacaagtcatggaagaagaccc
cctgtgacagccaaaattcccagctcagcaagttcgagacctttagctactggatttggg
ccaaaagcaactttaccttcatctatgggaagaccaatgacaggaggtatacagtttgag
gatggggtttctcgaccaatgacagcagtgcaagcggcaggttatactaagacagctatg
agaggttcttcatttgatcctcttggccaagcaagaggacctgcttcacctctggaaaag
aaaaattcggacagtccagaagagaagctgaagcagttggaaaaaaaagtgaatgaactg
gttgaagaaagctgtgttgccaacaactgtggagacttgaaattggctctggaaaaagca
aaagaggctggaagacaggaaagagaattgttgagacaacgtgaacaaattactcctcca
gaaaatatcaacttagacctcacttactcagttcttctcaatctggccagtcagtatgct
gctaatgaaatgtatgctgaagcactgactacgtaccaagttatagtgaagaataagatg
ttcactaatggaggtatactgaaggtaaatatgggaaatatatatttaaaacaacggaac
tattccaaagctatcaaattctaccgcatggctctagaccagattactagtgcccacaaa
gagatgaggatgaaaataatggaaaatattggagttgcatttattaaaactggccaattc
gttgatgccgtttcttcatttgaagacataatgagcatatccccaaacctgaaggcaggc
ttcaacttgatcctatgttattttgctattggagatggtgaacaaatgaagaaagccttc
aaaaaacttattgcagttcccttggaagtagattttgatgacaaatacatttcattaaat
gatgatctacatacaaatctactgcttgaagccattaaaaatgacagtataagtcaaatg
gaacgtgagaggaaatccatggcagaggaatacatcatgacggctgctaaactcattgca
ccagtaattgagacatcttttgcagtaggctatgattggtgtgttgatgcagtaaaagct
tcccactatgtggagttagccaatgacctggaaataaataaagccactacttacttgagg
cagcagaattttaaccaggcactggagactttgaaaatgtttgaaaaaaaggagagcaga
gtaaagagtgcagctgcaacaaacctttcattcctttattatttggggaatgaattggca
caagcaactaactatgcagatttagctataaattctgataggtacaatccagcagctcta
actaacaaaggaaatactgtttttgcaaatggagactatgaaaaagcagctgaattttat
aaggaagctctcaggaacgattccttatgcactgaagcactttataaccttggtttagca
tacaagaagttaaacaggatggacgaagctttggattttttgctgaaactccatgcaatc
cttcccaatagcgcccaagtcctttaccagatagcaagcatatatgagatcatggaagat
cccaatcaagccatagagtggctcctgcagttgatcagtgtagtaccaactgatccatat
gtactttcaaagctagggaaattatatgataatgaaggtgataaatcccaagcttttcat
tattactatgagtcataccggtatttcccttcaaacattgaggtcattgaatggcttgga
gcatattgcattgacacccagttttgtgaaaaagccattgagtactttgaaagagcagca
cttatcctaccgacacaagtgaagtggcagctgatggttgcaagttgctacaggagaagc
ggtaactaccagaaagctctggagaaatacaaagtcattcacagaaaattcccagagaat
gttgaatgccttcgatttttagttcgtctctgcacagatatggggctgaaagaagtccag
gaatatgtaacaaagctcaagaaagtggaaaaattaaaagaaataagagagcagcgcatt
aagtctggcagagatggcagtgcacgtaaccgcagagaaggaggtggtgacagtggtggt
accaaaggggaaagactgagtgccaaactaaaagctttgcctggaacaaatgaaccctat
gaaagtagaagcagtaaagaaatagatgcctcctacacagatccacttggcccacaagca
gaaagaccaagaacagcagcaagaaaaagaactgaggaagatgactttgctgatgaagaa
ctaggagatgatctgcttccagaatag
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