Empidonax traillii (willow flycatcher): 114058254
Help
Entry
114058254 CDS
T05887
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114058254 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114058254 (PARN)
Enzymes [BR:
etl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114058254 (PARN)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114058254 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
114058254
NCBI-ProteinID:
XP_027741224
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEVTRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDDTEEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTVPEDQKKF
VEKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLTPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVENKHEDKQTKRKCTEDSWKEMERKRLK
TQCTPYISQSRYYCVNSFTGASTVGKRSMSPIEEETGSDEMEEEEGQGPECEQTDPCAES
LPDGKKRAKKLKKMKTDQVPAGSLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaccaggagcaattttaaggataacctaaacaaagtctatgaagccattgaa
gagtcggacttcctggccatcgatggggagttttcagggatcagtgatggaccttctgtt
agtgcattaacaaatggctttgacaccccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgacacagaa
gaaaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagcatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagaaaga
cagctaagggaacagtatgatgagaagcgttctcaagccaatggggcaggatctctgtca
tacatttctcctaattccacaaagtgtcctgtaacagttcctgaagatcagaaaaaattc
gtcgagaaagttgtggaacagatagaagacttactaaagaatgaagaaagtgaaagtttg
gaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaaa
tatccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatatattgtt
attagtaaggtagatgaagaggaacgaaaaagaagagaacagcagaaacaagcaaaagaa
caggaagaattgaatgatgcagtaggattttccagagttgttcatgccattgctaattct
ggcaagctggttattgggcacaatatgctgctggatgtcatgcataccatacatcagttc
tattgtcccctgcctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccc
cggttattggatactaaactgatggcaagcacacaacctttcaaggagatcattaataat
acatcacttgcagaactggaaaaacgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacagcatctgagcaactccacgaggcagga
tatgatgcctacatcactggactgtgcttcatttccatggctaatttcctaggttccttc
ctcactcctccaaaaaaccatgtgtctgccagatccaaactcattgaacctttttttaac
aagctgtttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagccgaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctttaccagcttttcagtgcctttggtaacattcaggtgtcatggattgatgatacatca
gcatttgtgtcactgagccagccagagcaagtacaaatagctgtaaacaccagcaggtat
gctgagagttacaggatccagacatatgcagagtatgttgagaacaaacatgaagacaaa
cagacgaagagaaaatgcacagaagacagttggaaggagatggagaggaaacggttaaaa
actcagtgcacaccctacatctcccagagtcgctactactgtgttaacagttttacaggt
gccagtacagtgggcaagagaagcatgagtcctattgaggaggaaactggttctgatgag
atggaagaggaagaaggccaagggccagaatgtgagcagacagacccctgtgcagagtcc
cttccagatggcaagaagagagccaaaaaattgaaaaagatgaagacagatcaagttcca
gcaggaagcctcaccactagttccactggaatttttgaagtccctgaaacatggtag
DBGET
integrated database retrieval system
