Empidonax traillii (willow flycatcher): 114058479
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Entry
114058479 CDS
T05887
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
114058479 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
etl01001
]
114058479 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
etl04054
]
114058479 (CIITA)
Enzymes [BR:
etl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
114058479 (CIITA)
Protein kinases [BR:
etl01001
]
Serine/threonine kinases: Other
TAF1 family
114058479 (CIITA)
Pattern recognition receptors [BR:
etl04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
114058479 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
NB-ARC
LRR_9
nSTAND_NTPase5
NPHP3_N
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114058479
NCBI-ProteinID:
XP_027741663
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MDFVPENGYLDLLHSDFDPLQLCAFLDPKSSGDGECDFTADLEVDASNYEQLNNMDFMTT
MENAENGDGSYLCSNTTDAYAKMAELVEYVLKDHQEKQVEDIFAGNLNLDEMAAENTEKF
PDVKKQKCHKRTFLGSAENCTDASEPKYRKTVEVPAVSAGNGSFLALPLSSLPVSCTSLT
NQHLSFSGPAAHSLERSFLIPGSSEPCTAGFLPVSVKGSQDNPGFADPPQQLLNFVLENG
ISDFIIYPVLPSSMETFIPPSFPVSSFDVETFEEVQDSIVPSEDPFKTQELVETFCTSLK
DYFRDTCKFVTMEREVALDHLFIDGTLVQSQTETRTGRNNAKTTENQLVTCSLHEKEKTA
IDRSQIFQIPQRKGLETKVIVVLGKAGMGKSILVQKICQDWSNGEFSEFEFVFWFDCEQI
SLPEKRYSLQELLLEFFVKPQEGSKEIFEYILQNPAKVLLVFDGFKGLHDHENSPRRPAS
QPEKDLYSIKELLSGLTQKKILNGCTLLFTARPKDKVYHYVSKVDKTIEIVGFSPEQREL
YITKYFKGLSYCDSALKLVKEHEYLFSHCYSPGMCKFICFLCETALEMGEESLPSTLSEV
FLKFFQQKTIPVQTDVTGTQNQENLAPLGRIAWCLGEKQQSAMKSDLFPSKEAKEFALKY
GFFLPFAFPRHSDSEEEEFGSTFSDFVVQNFLCALHLLLAEELKDKSVTKYLSFPSKRKK
PYNWLDLVPRFLSGLLFLQDDPYFCSLSNQDAIQAVKKQNKLLKYIKRLQINDLCPERLL
ELLRCVYETQNHYLLQHVALRLKPDLSFLDIVLTPPDVHVLHSILKRSRKEFSLDLRNSS
IDMQGLKDLVSLKNVASFRASLNDTVRLWKSLEQSKDYELLKASAEKFVLNPFKAKTMKD
ISDLSDLVEIQEKMVNCEQDASESTSYEIRAIKNLRKLEFALGPVCGPQGLLRLVKILAA
FPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKITDAGAEKLATALPSL
SSLKTLSLYNNNISDFGAENLAKVLPAMTSLRVLDVQYNKITSVGAQQLTNSLRKCPHIK
NLVMWNPTIPHGILEYLQQLDSRISV
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggattttgtgcctgagaatggctaccttgatttactgcacagtgacttcgacccgctg
cagctgtgtgctttcctggatcctaagtcatctggagatggagaatgtgacttcactgca
gatcttgaagttgatgccagcaactatgaacagttaaataatatggatttcatgactact
atggaaaatgctgaaaatggagatgggtcgtatctctgttccaacaccacagatgcttat
gctaaaatggctgaattagtagaatatgtgctcaaggatcatcaggagaagcaagtggaa
gacatttttgcagggaacctcaatttggatgaaatggctgctgaaaacactgagaaattt
cctgatgtaaagaagcagaagtgtcataaacgaacattcttaggctctgcagaaaattgc
actgatgcttcagaaccaaaatacaggaaaactgtggaagtgcctgcagtgtctgcaggg
aatggcagcttcttagctctgcctctcagcagcctgccagtgagctgcacctccctgact
aaccagcacttgtccttttctggtcctgctgcccacagcttggaaagaagtttcctaatt
cctggatcttcagaaccttgtactgcagggttcctacctgtcagtgtgaaagggagccag
gacaatccaggctttgcagatcctcctcagcagttacttaactttgttcttgaaaatggc
atatctgattttataatatatccagtgctgccttcttccatggaaacattcataccccca
agttttccagttagttcatttgatgtagaaacatttgaagaagttcaagattccatagtt
ccttctgaagaccctttcaaaacacaggagctggtggaaactttctgtacatcccttaag
gattatttccgagacacgtgcaagtttgtgaccatggagcgtgaggtagctctggatcac
ctgttcattgatgggacacttgttcaaagccaaactgaaaccaggactggaaggaataat
gcaaaaacaacagaaaaccagctggtaacttgcagtctgcatgagaaggaaaagacagcc
attgacagaagccaaatatttcaaatcccacaacgtaaaggcttagagactaaagtgatt
gtggtgctgggaaaagcaggaatgggaaaaagcattctcgttcagaagatctgccaagac
tggtccaatggagagttttctgagtttgaatttgtgttttggtttgactgtgaacaaata
agcttgcctgagaagcgatacagcctgcaggaactgctgcttgaattttttgtaaaacct
caagagggaagcaaagagatatttgagtatatattgcaaaatcctgctaaagtccttctg
gtttttgatggttttaaaggattgcatgaccatgagaattctcctcgtcgcccagccagc
cagcctgaaaaagatttgtacagtataaaggagctgctttcaggactcacccaaaaaaag
atactcaatggttgtaccttattatttacagcaagaccaaaagacaaggtgtaccactac
gtgtccaaagtggataagaccattgaaatagtaggattttcccctgagcagagagaactg
tacataaccaaatacttcaagggattgtcctactgtgacagtgcactgaaattagtcaaa
gagcatgagtacttgttcagtcattgttacagccctggtatgtgtaaatttatttgtttt
ctttgtgagacagcacttgaaatgggagaggaaagcctcccttcaactctttctgaagtc
ttcctgaaattttttcagcagaagacaatacctgtgcaaacagatgttacaggcacacaa
aatcaagagaatcttgctcccttaggccgtatagcctggtgtcttggagaaaagcagcaa
agtgccatgaaaagtgatctgtttccttctaaggaagctaaagagtttgctctgaaatat
ggatttttcctgccatttgcgttccccagacattcagatagcgaagaagaggaatttggg
agcacgttctctgattttgttgttcagaacttcttgtgtgcgcttcaccttctgttagca
gaagagctcaaggataaaagtgtaacaaagtacctgtcttttccatccaaaaggaaaaaa
ccctataactggttagatttggtgcctcgatttctgtctgggttgttgtttctccaggat
gacccttacttctgctccctttcaaatcaggatgcaatacaagcagtgaagaagcagaat
aaactcttgaaatacattaaaaggctgcagattaatgatctctgtccagagaggttgctg
gagctcttacgctgtgtttatgaaacacaaaaccattacctcctgcagcacgtggccttg
agactcaagccagacttgtctttcctggacatagtccttacaccacccgatgtccacgtg
ctgcactctattttaaaaaggtcaagaaaggagttttccttggatttgagaaacagcagc
attgacatgcaagggctcaaagacttggtcagcctgaagaacgtggcgtcgttcagggcc
tccctcaatgacactgtccgactctggaaatctttagaacagtcgaaagactacgagctg
ctgaaagcctctgcagagaaatttgttcttaatccctttaaggcaaagacgatgaaggac
atcagtgacctctctgaccttgtagagatacaagagaagatggtgaattgtgagcaagat
gcatctgagtccaccagctatgaaattcgtgccatcaaaaacctcagaaaactcgaattt
gcgctgggtccagtgtgtggccctcagggactgctaagactcgtcaaaattcttgcagca
tttccatcacttcaacatttagaccttgacgctctgagtgaaaatggcataggagatgaa
ggagcaaagagtttatctgaagtctttccaaccctgacatcactggaaacattaaatttg
tcacagaataaaataacagacgcgggtgcggagaaactcgcgacagctcttccttccttg
tcgtccttaaaaacactaagcttgtacaataacaacattagtgattttggagcagaaaat
ctggcaaaagttcttcctgcaatgacatctttgagagtgctagatgttcaatacaacaaa
ataaccagtgttggagcccagcagttgaccaacagcctacgaaaatgtccccatataaag
aacttggtgatgtggaatcccaccattccccatggaattcttgaatatcttcagcagctg
gactccaggatcagcgtgtag
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integrated database retrieval system
