Empidonax traillii (willow flycatcher): 114058867
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Entry
114058867 CDS
T05887
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
etl03016
]
114058867 (RTCB)
Enzymes [BR:
etl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114058867 (RTCB)
Transfer RNA biogenesis [BR:
etl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114058867 (RTCB)
Prokaryotic type
tRNA splicing ligases
114058867 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
114058867
NCBI-ProteinID:
XP_027742467
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcgtgtggagggtgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggaggaggtgcaggt
ggcttcttgcctgctatgaaacagattgggaatgtggctgcattacctgggattgttcac
agatcaataggccttccagatgtccattctggctatgggtttgccattggcaacatggct
gcctttgatatgagtgatccagaagcagtggtttcaccaggtggtgtaggatttgacatc
aactgtggtgtccgcttgctgcgtacaaatttggatgaaagtgatgtgcagcctgtgaaa
gagcagcttgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggctctagagatgggagtggactggtctctc
cgggagggctatgcctgggcagaggacaaggagcactgcgaggaatatggaagaatgttg
caggctgatcccaacaaagtctcctcaagagcaaagaagaggggtctgcctcagctgggg
accctgggagccggaaatcattacgccgagatccaggttgtggatgacatctacaatgag
tatgctgccaagaagatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagaggtctgggccaccaggttgccacagatgcactcgtggctatggaaaaagca
atgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgtgccaggattgcctct
gctgagggacaggattacctgaagggaatggcagctgctgggaactatgcgtgggttaac
cgctcttctatgacctttctaacaagacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
cacgtagtggacggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcctgtgctg
atcggcgggactatgggcacctgtagctatgtccttactggcacagagcaaggcatgact
gagaccttcggaactacttgtcatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgatatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgac
gtggttaacacctgccatgaagctggcatcagcaagaaggccattaaactgagacctatt
gctgttataaaaggctag
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