Empidonax traillii (willow flycatcher): 114059490
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Entry
114059490 CDS
T05887
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etl03041
]
114059490 (DDX1)
03016 Transfer RNA biogenesis [BR:
etl03016
]
114059490 (DDX1)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114059490 (DDX1)
Spliceosome [BR:
etl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114059490 (DDX1)
Transfer RNA biogenesis [BR:
etl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114059490 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
114059490
NCBI-ProteinID:
XP_027743799
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGGVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEIPPHLKNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPDGSVVKSQHSGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQIEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcagaaatgggtgttatgcctgagatagctcaagcggtggaggagatg
gactggcttcttcctacggatatccaagcagaatccatcccactgattctgggaggtggt
gatgtacttatggctgctgaaaccggaagtggaaaaactggtgcttttagcattccagtt
atccagattgtgtatgaaacactgaaggaccaaatggaaggcaagaaaggaaaagccact
attaaaactggtgggggagtactcaataaatggcaaatgaacccgtacgatagaggatca
gcttttgcaattggatcagatggtttgtgttgtcaaagcagagagattaaagaatggcac
ggatgcagagcaactcgaggcgtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatttgggcact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcacgatacaattgggtgttatctagacatagataaa
ggacaaataaaattttccaaaaatggaaaggacctcggccttgcatttgaaatcccacca
cacttaaagaaccaagcactttttgcagcttgtgtactgaagaacgctgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctatgtcggcctttgcaag
gctcctgatggtagtgttgtaaaatcacagcattcaggaaatgcacaagtggttcaaaca
cagaaccttccaaatgctccaaaagcattgattgtagagccatcaagagaactggcagaa
caaactttgaacaacgtgaagcagttcaaaaaatatgttgataatcccaaattaagggag
ctgctaattattggtggtgttgctgcaagagatcagctctctgtactggaacaaggagtg
gatattgttgttggaactcctggaaggctggatgacctggtctcaacagggaagattaat
ttatctcaagttcggttcctggttctggatgaagctgatggccttctcctccagggatac
tcagatttcataaacaggatccacagtcaaattcctcagataacttcagatgggaagaga
cttcaggtgattgtgtgctctgcaacactccactcttttgatgtgaaaaaactatctgaa
aagatcatgcattttcccacctgggttgatctgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaagctgataaactctgggaaaggctcggc
aagaatcatatcagaactgatgaagtgcatgcaaaggacaatacccgacctggcgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgggca
atcaaagagcacaagatggaccaagccattattttctgcaggactaaaatagactgtgat
aatatggagcagtactttatccagcagggtggaggccctgataggaagggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcatggtgttccatatgttatcaatgtgactctcccggatgaaaaacagaactatgtt
catcgaattgggagagtaggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaggggtgttacaat
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaaattgaaccagacataaaagtacca
gtggatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactt
tataaaggccatgtggatattctggcacctacggtacaggagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattt
tga
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