Empidonax traillii (willow flycatcher): 114059817
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Entry
114059817 CDS
T05887
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl04382
Cornified envelope formation
etl04510
Focal adhesion
etl04512
ECM-receptor interaction
etl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114059817 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114059817 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114059817 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114059817 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
etl04147
]
114059817 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
etl00536
]
114059817 (COL4A2)
Exosome [BR:
etl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114059817 (COL4A2)
Glycosaminoglycan binding proteins [BR:
etl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114059817 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114059817
NCBI-ProteinID:
XP_027744481
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MHPYSAFEKSCNQNADVDAGGKKSYTGPCGGRDCSGGCQCFPEKGSRGQPGLLGSQGFTG
PPGLMGIPGVQGPKGHKGERGYPGITGPKGEVGQRGVTGFPGADGIPGHPGQPGPRGKPG
HDGCNGTAGDPGDLGTPGRSGFPGTIGVQGPKGQKGEPYIIAPEIISRHRGDPGDPGFNG
FPGPPGTLGIQGPVGPRGERGRPGRPGPPGPPGPQGNRGLGFYGEKGEQGPPGPPGPPGL
PTRELMGVPSDKHKGERGDPGPKGEPGIPGILLFAPEKGEEGVIGFPGQRGLPGINGFPG
LSGERGFPGFDGPPGGFGPRGSKGEPGEMGPPGPDSYFPSRIPRKGARGDPGFPGASGIP
GDRGEEGDRGLPGPPGFSDADGDKPGLPGEMGPKGEKGERGSPAYYAGPPGLPGKDGSPG
LRGPPGPVGAPGPLYGLKGQEGVPGRFGTQGFPGPRGQKGPKGEEGDCTACLLGEELRRG
STGPPGPPGFPGTPGQPGRKGEPGDQGPHGLPGYPGAKGFSGPAGFPGRKGEKGDSLHIT
TKGTKGIRGDPGLPGIQGGDGFPGRDGLDGLPGQPGLPGDGIRGFPGDPGYPGELGPKGF
PGEAGPPGEGFPGPKGFRGPPGDQGQDGIPGSPGLPGLPGEPGQLDCGQVTEDFPRGDAT
EPIWSGAGCVRPPKGSQGRPGLPGATGAKGARGFPGDPGPMGFPGLNGTRGDPGREGLPG
PPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGTPGPKGLPGDVFGAAAGSRGDVGLPGF
PGLKGAPGDQGVPGVRGADGNPGLPGQKGDPGPQGLPGLMGLPGIPGTHGFPGPPGNRGP
DGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDKGEAGHPGLPGIRGVTGPPGISGM
DGFPGDKGSRGSPGIDGFKGMTGLKGRPGIKGIKGEFGPLGPQGDKGSQGARGFKGDRGD
QGPPGEPPKLMPSMMMEVKGEKGDAGERGTKGFFGLKGSKGMPGLPGKTGTPGSPGHPSY
VAGVKGDIGAKGLTGLKGYPGPTGSPGIRGFPGSTGIRGEKGVPGISGHFGTPGSHGEIG
DRGDTINLPGMPGLKGEAGVPGLTGIRGGVGQKGEGGDPGFPGIEGLKGIQGDPGSVGQE
GLPGLVGPPGQQGSPGTPGFQGEKGSPGWPGLPGQAGFPGSRGISGLHGLPGTKGLPGSP
GPDGYGSAGFPGAVGDKGEAGEPSRVQGSRGPPGQKGERGVPGVPGPFGIPGQEGFPGPP
GISNISGYPGDKGSPGLDGVPGYPGPPGHPGIPAPPGSKGESGQIGMIGEIGPKGSRGDP
GLAGRPGIPGFPGPKGRKGEQGVIGFMGTVGFPGDLGPIGPKGDRGVTGFQGPPGSPGLP
PLPPRLVAEQGSPGPRGNIGPPGSPGDMGPQGPPGDPGPRGSPGEPGLQGRGGIPAPPGS
RGEQGGTGFQGPVGFEGQPGRPGSPGPPGMPGRSVSMGYLLVKHSQSDQEPMCPVGMNKL
WSGYSLLYFEGQEKAHNQDLGLAGSCLSRFSTMPFLYCNPGDICYYASRNDKSYWLSTTA
PLPMMPVAEDEIKPYISRCSVCEAPAVAIAVHSQEASIPHCPEGWRSLWIGYSFLMHTAA
GDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTIDRPFQSKPSADT
LKAGLIRSHISRCQVCMKNL
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgcatccttactcagcttttgaaaagtcctgtaatcagaatgcagatgtggatgctggt
ggaaagaagagttacacaggaccatgtggaggcagagactgcagtggaggatgtcagtgt
ttccctgaaaaaggaagccgtggccagccaggactccttggatcacaagggttcactgga
ccaccaggattgatgggaatcccaggagtgcaaggtcctaaaggtcacaaaggtgaaaga
ggatatccaggaataactggacccaaaggagaagtgggacaaagaggagtcactggattc
cccggggcagatggcattcctggtcatccagggcagccaggaccaagggggaaaccaggt
catgatggctgtaatgggacagcaggtgaccccggtgacttgggaactcccggacgctct
ggtttccctggtaccattggagtccaagggccaaagggccagaagggggagccgtacata
atagcaccagagatcataagccgacacaggggggatcctggggatccagggttcaatggt
tttccaggacctccaggtacgctgggtattcaaggacctgttggtccaagaggagagcga
ggaaggccaggacgaccagggcccccaggaccaccaggaccacagggcaacaggggcctt
ggcttctatggagaaaaaggtgaacagggccccccaggtcctccaggtccacctgggctt
cctacaagagaactgatgggtgtcccctctgacaaacataagggtgaaagaggagatcct
ggaccaaaaggggaacctggaattccaggtatacttctctttgctcctgaaaaaggtgaa
gaaggagtaataggcttcccaggacaaaggggactgcctggcatcaatggttttccagga
ctcagtggagaaagaggttttccaggatttgatggtccacctggtggctttggtcctagg
ggaagcaagggggagcctggcgagatgggtcctccaggaccagattcttattttccttcc
cgcatcccaagaaaaggtgcaagaggtgatccaggcttcccaggtgcttctggaatacca
ggagaccgaggagaggagggagatcgtggtttgcctggtccccctggattctctgatgcg
gatggggataagccaggcttacctggagaaatgggaccaaaaggtgaaaaaggtgaaaga
ggatctcctgcttattatgcgggcccacctgggcttccgggtaaggatggctcaccagga
ctccgtggtccacctggtcccgttggagcccctggtcctctctatggattaaaaggacag
gagggagtgccaggtagatttggtacacaaggttttcctgggccaaggggacaaaaagga
cctaaaggcgaagaaggggattgcactgcatgccttttgggtgaggaactcagaaggggc
tctactggcccccctggccctcctggttttccaggaacccctggccagcctgggaggaaa
ggagaacctggtgatcaaggaccacatggtcttcctggctaccctggagcaaaaggtttt
tcgggtccagctggatttcctggacggaaaggagagaagggagattctttacatataact
actaaaggcaccaaaggaatccgaggagatcccgggctgcctggtatccaaggtggagat
ggtttcccaggcagagacggattagatggtttaccaggacagcctggccttccgggtgat
ggtatcagaggtttcccaggtgatcctggttatccaggtgaattaggcccaaagggcttt
ccaggagaagcaggcccgccaggtgaaggatttcctggtccaaaagggttccggggtcct
ccaggtgatcaaggacaagatggaatcccaggatctccgggtctgcctggtctgccggga
gagcctggccaattagactgtggacaggtcactgaagactttcctagaggagatgcaacc
gagccaatatggtcaggcgcaggctgcgtgaggccaccaaagggatcccagggcaggcca
ggactgccaggagccacaggtgcaaaaggtgcaagaggattcccaggtgatccaggtcca
atgggctttccagggctaaatggtacacgaggtgatccaggtcgggaaggactcccaggt
cctccaggttttactggacccaggggagacagaggtccaaatggtctacctggactgcag
ggacatccaggccttacaggaaaatctggagctccaggaacaccaggaccgaagggcctt
cctggtgatgtttttggagcagcagcaggttcccgaggagatgttgggcttcctggcttc
ccagggttgaaaggtgcaccaggagatcaaggagtaccaggagttagaggagcggatggt
aacccaggtttgccaggacagaaaggagatccagggccacaaggtctccccggtttgatg
ggattaccaggaataccaggaacacatggattcccagggccaccaggaaatcgtgggcca
gatggtgggcctggctctcaaggacctcttggcccacctggtgctaggggagaggatggt
gagcaaggttttcctggccctgtgggcctgaaaggtctgtctggtgacaaaggtgaagca
ggtcacccgggattaccaggcatacgtggagtgactggtccccctggcataagtggaatg
gatggctttccaggagataaaggttcaagaggctcacctggcattgatggtttcaaaggc
atgacaggcctaaaaggaaggccaggcattaagggaatcaaaggagaatttggccccctt
gggcctcagggcgataaaggctcacagggtgcacgtggcttcaaaggtgaccgtggggat
caaggccccccaggagaacccccaaaactcatgcccagcatgatgatggaagttaaaggt
gaaaaaggagatgctggagaaaggggcacgaagggattctttggcttaaaaggtagcaag
ggaatgccaggtcttcctggaaagacaggaaccccagggtcgcctgggcatcccagctac
gtggctggtgtgaaaggggatattggcgcgaaagggctgacaggtctgaaagggtatcct
ggtcccactggctctcctggcatcagaggcttccctggcagcacaggaatcagaggagaa
aagggtgttccaggaatttcaggccattttggtactcctggctcacatggagaaataggt
gatcggggagatactataaacttaccaggaatgccaggccttaaaggggaagctggtgtg
ccaggcttaacaggcataagaggaggcgtgggacaaaaaggtgaaggtggagatcctggt
ttccctggcattgaaggcctcaagggcatacagggtgaccctggctctgtgggacaggaa
ggtttgccgggactggttggtccgccagggcagcaaggaagccctgggacgcctggattt
caaggtgaaaagggaagtcccggctggcctggcttaccaggacaagcaggctttcctggc
tcaagaggaattagtggactgcatggtttaccaggcactaagggcttaccaggatcacca
ggtccagatgggtacggctctgcaggtttcccaggtgcagtgggggacaaaggagaagcg
ggagagccaagcagagtgcaaggcagccgaggacctccaggccaaaagggagagagaggt
gttccaggagtcccgggaccatttggtattcctgggcaggaaggatttccagggccccct
gggatttcaaatatatcaggatatcctggtgataaaggctccccaggtctagatggagtg
ccaggctatccaggaccaccggggcatcctggaatacctgctccaccaggaagcaaagga
gaaagtggacaaataggtatgatcggagaaattggcccaaagggaagcagaggtgatcct
ggattagcagggagacctggcattcctggattccctggaccaaaaggtcgtaagggtgaa
caaggtgtcatcggctttatgggcaccgtaggatttccgggtgatttaggacctattgga
cccaagggtgatagaggagtaactggtttccagggacctccaggctctcctgggctgccc
cctcttcctccaaggctggttgctgagcaaggttccccaggtccccgtggaaatatagga
cctccaggaagtccgggagatatgggacctcagggtccaccaggggatccaggtcccaga
ggttcacctggagagccaggactccaaggcaggggtggtattccagctcctcccggctcc
agaggtgaacaaggaggaacaggatttcagggtccagtgggatttgaaggtcagccaggc
cgccccggtagccccgggccaccaggcatgccgggtcgcagtgttagcatgggctacctg
ctggtgaagcacagccagtctgatcaagagccaatgtgcccagttggcatgaacaaactc
tggagtggatacagcctactatattttgaaggacaagagaaagcgcacaaccaggatcta
gggctggctggctcgtgtttgtctcgttttagtactatgccattcctctactgtaaccct
ggggatatttgttattatgcaagtcgaaatgataaatcctactggctctcaactacagca
cctcttccaatgatgcctgtggcagaagacgagattaagccatatatcagtcgctgctca
gtttgtgaggccccagctgtggcaatcgctgtccatagccaagaagcttctattcctcac
tgtcctgagggctggcgcagtttgtggatcggatattccttccttatgcacactgctgct
ggtgatgaaggtggaggacagtcgctggtttctcctgggagctgcttggaagattttaga
gcgactcctttcatcgaatgcaacggcgcccgcggaacctgtcactactttgccaacaaa
tacagcttctggctcactacgatcgaccgacccttccaaagcaagccctcggcagacaca
ctcaaggcaggactcatccgaagccatatcagcagatgtcaagtctgtatgaaaaactta
tag
DBGET
integrated database retrieval system
