Empidonax traillii (willow flycatcher): 114060022
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Entry
114060022 CDS
T05887
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114060022 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114060022 (CNOT6L)
Enzymes [BR:
etl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114060022 (CNOT6L)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114060022 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114060022 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
114060022
NCBI-ProteinID:
XP_027744954
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSSSLWSLTHLTALHLND
NNLTRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILSLYQDPDGTRKLLNYMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQ
YFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSEGSEAMLNRVMTKDNIGVAVVLEVHKELFGASLKSLHVDKQLLIVANAHMHWDPE
YSDVKLIQTMMFVSELKNILEKASSRPSSPTADLNSIPLVLCADLNSLPDSGVVEYLSNG
IVADNHKDFKELRYNECLMNFSGNGKNGASEGRITHGFQLKSAYENNLMPYTNYTFDFKG
VIDYIFYSNTHMNVLGVLGPLDPQWLVDNNITGCPHPHIPSDHFSLLTQLELHPPLLPLV
NGVHLPSRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccggatcctcgcagaatttacaccatcatgtcagca
gaagaggtagccaacgggaagaagtcacactgggctgagttggagatctcaggcagagtg
cggagcttaagttcgtcgctctggtcgctgacgcacctgacggctctgcacctcaatgac
aacaatcttactcgcattccacctgatattgccaagctccacaacctggtttacttggat
ctgtcatccaacaaactcagaagtttaccagcagaactaggaaacatggtatctctcagg
gaattgcttttaaataacaatctgttacgggttttgccttatgaacttggacggctcttc
cagctacaaaccctgggtttgaaaggcaatcctttatcccaagatattctcagcctctac
caggacccagacggaacccgaaagctactgaactacatgctcgacaatctagcagttcat
ccagagcagctgcctccaaggccatggattactttaaaagaacgagaccaaattctgccc
tcagcttcatttacagttatgtgttacaatgtgttgtgtgataaatacgccaccaggcag
ctctatggctactgcccatcctgggcactcaactgggagtacaggaaaaagggaatcatg
gaagaaatcgtcaactgtgatgcagatatcattagtcttcaggaagtggaaacggagcaa
tacttcaccctttttctgccagccttgaaggaacggggatacgatggattcttctctccg
aagtcacgtgccaaaatcatgtctgagcaggagaaaaagcatgtggatggctgcgccata
ttcttcaaaactgaaaagttcacgctggtgcagaagcacacggtggagttcaaccaggtg
gccatggccaactcagaaggttcggaagccatgctgaacagagtgatgaccaaggacaac
atcggagtcgccgtggtgttggaggtgcacaaggaattgtttggggcaagtttgaaatct
cttcacgtggacaagcagctgctcatcgtggccaatgcccacatgcactgggaccccgaa
tactcagatgtgaaactcatccagaccatgatgtttgtctcagaactgaaaaacatcctg
gagaaagcctccagcaggcccagtagcccgacagcagatctgaattccattcctctggtg
ctgtgtgcggatctcaactccctccctgattcaggtgtagtggaatacttaagcaacggc
atagtggctgacaaccacaaggacttcaaggagctgcgttacaacgagtgtctcatgaac
ttcagcgggaacgggaagaacggagcctccgagggcaggatcacacacggcttccagctc
aagagcgcctacgagaacaacttgatgccttacaccaattacacttttgatttcaaaggt
gtgattgactacattttctactccaacacccacatgaacgtgctcggagtgctggggcct
ttggacccccagtggctggtggacaacaacatcactgggtgcccgcacccccacatcccc
tccgaccacttctccctgctgacccagctggaactccaccctccgctcctgcctctcgtc
aacggggtgcacctcccgagccggaggtag
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