Empidonax traillii (willow flycatcher): 114060404
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Entry
114060404 CDS
T05887
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114060404 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etl03400
]
114060404 (MSH6)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114060404 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
114060404
NCBI-ProteinID:
XP_027745688
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWISIKYLRPYKGSSHRET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEEEIEEMSENASG
NSDDCSSDEDMKSNKRVKSRERAVKTKRRRVLDSDSDHEGSDTEFKPDVKEAASSEEASS
GVDENESSDTETDAESIAESPIKVPSKRKRTEVKKPAKRSSLGNESSETPKRAATVSSEA
KSKLTSFAAPESFESQANACNGGIGGFTVWEHEKLDWLQEGKRKDAHRKRQGDPDYDPCT
LYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVIGVNELGLIFMKGT
WAHSGFPEIAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSAAHTTKFDRVVRREICR
IITKGTQTYSIMDCDPSENHSRYLLCVKEKEDSSGQRVYGVCFVDTSVGKFFVGQFSDDR
HCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLKVL
LEEEYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGDNSELALSALGGCVFYLKRCLID
QELLSRANFEEYVPVDIATARTTSSSSLFAKTDQRMVLDGVTLMNLEVLQNGTNGSTEGT
LLERIDSCCTPFGKRLLKQWLCAPLCNPKSINARLDAVEDLVAVPDKMSEVSEHLKKLPD
LERLLNKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEE
VARDFKSKVLRQLVTRKATNPDGRFPDLSAELTRWDTAFDHNQARKTGVITPKAGFDPDY
DGALQDIKAVEEDLQKYLDKQRKLLGFKSIQYWGTGKNRYQMEIPESVISRKLPEEYELR
SSRKGYKRYWTKEIEKMLAAMANAEERRDAALKDCMRRLFYNFDKNSKDWQAAVECIAVL
DVLMSLARYSQDGDGPLCRPVIVLPVDGAPPFLELRNSRHPCITKTFFGDEFIPNDIVIG
ARDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLAVMAQLGCYVPAEACRLTPIDRVFTRL
GASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAE
RIRCRTLFSTHYHSLVEDHSRSAAVRLGHMACMVENESEDPSQETITFLYKFAEGACPKS
YGFNAARLADIPDDIIQKGHRKAKEFEKTTLSLRVFRYLCQVVDGATSDANAVQKLTAMI
SHL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccacccgactgaaagaacaatc
gtcagaggaaaaggaaaatccactcgtgtccatgtacagttttttgatgacagccctaca
agaggctggatcagtattaaatacctgaggccatataaaggttcatcacatagggagacg
ctgaagggaggaatgttttacagtacaaaacctgaaattaaaagagcaatggtgttggca
gacgatgcaatgagcaaagataaaactaagcggcttgagctggcagtatgcaatgaacct
tcagatacagaggaggaggaagaggaggaaatagaggagatgagtgaaaatgcatcaggc
aacagtgatgattgcagtagtgatgaggacatgaagagcaataagcgagtaaagagcagg
gaaagagctgtaaaaaccaagagaagaagagtgttggattctgacagtgaccacgaaggc
tctgacacagagttcaagcctgatgtgaaagaagcagcaagcagtgaggaagcgagtagt
ggggtggatgaaaatgaatcttctgacacagagacagatgcagaaagcattgcagaaagt
cccataaaagtcccttctaaacgaaagagaacagaggtgaaaaagcctgctaaaaggagt
agcttaggaaacgaatcttctgaaacacccaaaagagcagcaacggtctcttcagaagcc
aagtccaagctgacatcgtttgcagcacctgaaagttttgaatctcaagcaaatgcttgc
aatggaggcattggtggcttcacagtgtgggaacacgaaaagctcgattggctgcaggaa
gggaaaaggaaagatgcgcacaggaagcgtcagggtgaccctgattatgacccttgcact
ctctacgtgcccgaggattatctcaacaagtgtacaccaggaatgcggaggtggtggcag
ctgaaaagtcagaactttgatgctgtgattttctacaaagttggaaagttctacgagttg
tatcacatggatgcagtcattggtgtaaatgagctgggcttgatctttatgaaaggtact
tgggcccattcaggttttccagaaattgcatttgggagattctctgatgttctagtgcag
aaaggctacaaggtagcccgtgtcgagcaaacagaaactcctgaaatgatggaagcgcgc
tgcaagtcagcggcccacaccacaaagtttgacagggtggtacgccgagaaatctgcagg
atcatcaccaaaggaactcagacttacagcattatggactgtgatccctctgagaaccac
agcagataccttctgtgtgttaaggagaaagaagactcctctggacaacgtgtgtacggg
gtctgctttgttgacacgtcggtggggaagttttttgtaggccagttctcagatgatcgt
cactgctcgaggtttaggactttggtagcacattacactcctgtgcaggtactgtacgag
aaggggaacctgtctgtggacacacagaagatactgaagggctcacttgtttcttgcatt
caggaagggctgatctcgggttcccagttctggaatgcatctaaaacactaaaagtcctt
cttgaagaagagtatttcaaggagaagcagaactctgaaaatgggtgttctctgccctct
gtaatcaaatctctgacttcagagagtgattcgctgggattaactcctggtgataacagt
gaattagctttgtcagctcttggggggtgtgtcttctatctcaaaagatgtctgattgat
caggagctgctgtcacgggcaaacttcgaggaatatgtccctgtggatattgctactgca
agaactacgagttcaagtagtttgtttgccaaaactgaccagcggatggtgctggatgga
gtcaccctgatgaacttggaagtcctgcagaacggaaccaatggaagcacagaaggtact
ttgttggaaaggatcgattcttgttgtacaccatttgggaagcgactcctgaaacagtgg
ctttgtgctccactttgtaatcctaaatccatcaatgctcgtttggatgctgttgaggac
cttgtggcagtgccagataaaatgtccgaagttagtgagcacttgaagaaactgcctgac
cttgaaaggctgctcaacaaaattcacagtattggatcaccgctcaaaagccagaaccat
cctgacagcagggccatcttttacgaagaaatcaaatacagcaaaaagaaaatcgctgac
tttttgtctgcactggagggttttaaagtcatgaatgaaattgttgatgtcatggaagag
gtcgccagggacttcaaatcgaaagtcctgaggcagctagtcacccgcaaggccacaaac
ccagacggccgcttcccagacttgagtgcagagcttacaagatgggatactgcttttgat
cacaaccaggctcggaagacaggggtgattactccgaaggcaggttttgaccccgattac
gatggagcactacaggatattaaagctgtcgaggaagatcttcagaagtacctggataag
cagcgcaaactgctcggattcaaatccatccagtactgggggacaggcaaaaaccgatac
caaatggaaataccagaaagcgtcatatcacgtaagctgcccgaggaatacgagctgagg
tcgagcaggaaggggtacaagcgttactggaccaaggagatcgagaagatgctggcggcg
atggccaacgcggaagagcggcgcgacgcggcgctgaaggactgcatgaggcgcctgttc
tacaacttcgacaaaaatagcaaggactggcaggcagctgtggagtgcattgctgtgctg
gatgtcttgatgtccctcgctcgctacagtcaagatggtgatggacctctgtgccgacct
gtaattgtgctgcctgtggatggtgctcctcccttcctggaacttagaaactcgcgccat
ccgtgcatcacaaaaaccttctttggggatgagttcattcccaacgacatcgtgatcggc
gccagggatgaaggcagcagcagtgaagcttcctgtgtgttggtaaccggcccgaatatg
ggcggcaaatctacgctcatgagacaggctggtctcctggctgtcatggcccagctgggg
tgctacgtccctgcggaggcctgcaggctcacccccattgacagggtgttcacgcggctc
ggcgcctcagacagaatcatgtcgggtgaaagcaccttctttgttgaattgagtgagact
tccagcattctccagcatgcaacagagcattccctcgttcttgtggatgaactgggcaga
ggcacagctacctttgatggaacagcaatagcaagtgctgttgtgaaggagctggcagag
aggatccggtgtcggacgctgttctccactcactaccactcgctggtggaggaccattcc
cgcagcgcggccgtgcgcctggggcacatggcatgcatggttgaaaatgagagtgaggat
ccaagccaggaaacaattacgttcttgtacaagttcgctgaaggagcatgcccgaagagc
tatggcttcaatgcagcaagactcgcagatattccagatgacattattcagaaggggcac
agaaaagccaaggagtttgaaaaaacaaccctctcactcagagtatttaggtacctgtgc
caggtagtggatggtgctacaagtgatgcaaatgctgtgcagaaactcaccgcaatgatc
agccacctttaa
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