Empidonax traillii (willow flycatcher): 114060415
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Entry
114060415 CDS
T05887
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114060415 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etl03400
]
114060415 (MSH2)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114060415 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
114060415
NCBI-ProteinID:
XP_027745706
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All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAVGVVGVKLSNADGQRVVGVGYVDTTLRKLSVCE
FADNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILITDRKKVDFTTKDI
VQDLNRLLKSKKEEQINSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLVGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQVPNV
IQALEKHEGAHQMLLLAVFITPLTDICSDFSKFLEMIETTLDMDKVENHEFLVKSSFDPN
LTELREKMNELEEQMQSFLKTAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNS
KYTIVDTQKNGVKFTNSKLSSVNEEYIRNREEYEEAQDAIVKEIISIASGYAEPMQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVMLEKGQGRIVLKGARHPCIEMQDEVAFIPNDVTF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAF
TMFATHFHELTALADEVPTVNNLHVTALTTDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKDSEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDVKIKLKQLRNDVLAKNNSFVNEIVSRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggcggcccgcgagctcttc
cgcacccgcgccgtcatccggcagctggcgggggcaccgggaacacagaaacttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagagatctgcttctggtccgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccaatttgaggaagttctctttgcc
aacaatgatatgtccacagccgttggggttgtgggagtgaagctgtctaatgctgatgga
caaagagtggtaggagtgggctatgtcgacaccacgctgagaaaattgagtgtttgtgag
tttgcagataatgatcagttctcaaaccttgaagctctgctggttcaactggggccgaag
gagtgtgtcctaccaggaggagatactgcaggagagatgggaaaactgagacaagtcatt
cagaggggaggaatcctgattacagacaggaagaaggtggatttcacaacaaaggatatt
gttcaggatctcaatcgtttgttaaaatcaaaaaaagaagaacaaattaatagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtccttgtcagccgttatcaagttttta
gagttgctgtcagatgagtctaattttggacaatttgaactgactacttttgatctcagt
cagtatatggttctagataatgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgcgaatactgcacaatctctagttggtttactcaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaacagaattgaa
gaaaggttgaatttggttgaagcatttgtgatggatccagaactacgtcagtgccttcaa
gaagatctcttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaggactgttaccgaatgtaccaggctattaatcaagtgcctaatgtt
atacaagcactagaaaaacatgaaggagctcaccagatgttgttgttggcagtgtttata
acacctcttactgatatctgctctgacttctcaaaatttctggagatgatagagacaaca
ttggacatggataaggtggagaatcatgaatttcttgtcaagtcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagagcaaatgcagtccttcctaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaattca
cagtttggacatcactttcgaataacttgcaaggaggagaaagttctccgtaacaattca
aaatatacaatagttgatacacagaagaatggtgtgaaattcaccaacagcaaactgagc
tctgtcaatgaagaatatataaggaacagagaagagtatgaagaggctcaggatgcaatc
gttaaggaaatcattagcattgcttcaggttatgcagagccaatgcagaccatgaatgat
gtgatagctcagttagacgcgattgtcagttttgctcacgtgtccaacggagcaccagtg
ccgtatgtccgtcccgtcatgctggagaaggggcaggggaggattgtgctgaaaggtgca
aggcatccttgcatcgaaatgcaggatgaggtggccttcatccccaacgatgttacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaacc
tacatccggcagacaggggtgattgttctcatggcccaaattgggtgttttgtaccatgt
gactctgcagaaataaccattgtggattgtatcctggctcgggtgggagcaggagacagt
cagctgaaaggcgtgtctactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcatctgaaaactccctgataattattgatgagctgggaagaggaacttctacctac
gatggctttggcttagcgtgggctatctcagaatacattgctagcaaaatctgtgctttc
actatgtttgctacacatttccatgaactgacagctcttgctgacgaagtgccaacagta
aataacctacatgttactgctctgaccactgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtttgtgaccagagtttcggaatacatgtagcggagttggcagctttccca
aaacacgtgatagaaagtgcaagagagaaagccttggagctggaggagtttcaaaacatt
ggcaagtccaaggactctgaaggagaaccaccagccaagaaactatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtaaaagcattgcccctgacagat
atgtccgaagaagacgtcaaaatcaagctgaaacagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaatagtttctcgaacaaaagttacatcatga
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