Empidonax traillii (willow flycatcher): 114060437
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Entry
114060437 CDS
T05887
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114060437 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etl03041
]
114060437 (PRPF8)
Spliceosome [BR:
etl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114060437 (PRPF8)
Complex C
U5 SnRNP specific factors
114060437 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
114060437
NCBI-ProteinID:
XP_027745744
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggcggctgcgccccggtgcccagcccgctggcgccg
ctgcccgactacatgtccgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgcggagaagaggaaattcgggttcgtggacgcgcagaaggaggac
atgccccccgagcacgtccggaagatcatccgcgaccacggtgacatgaccaataggaag
ttccggcacgacaagcgcgtctacctgggagccctgaagtacatgcctcacgctgtgctg
aagctcctggagaacatgccgatgccctgggagcaaatccgagacgttcccgtcctgtac
cacatcaccggggccatctcctttgtgaacgagatcccctgggtcatcgagcccgtctac
attgctcagtgggggtcgatgtggatcatgatgaggcgggagaagagggacaggcgtcac
ttcaagaggatgagattccccccgtttgatgatgaagagccccctctggattacgctgat
aacatcctggatgtggagcccctggaagcgatccagctcgagctggatcccgaggaggat
gcccctgtgctggactggttctacgaccaccagccactgaaggacaacaggaagtatgtc
aacggttcgacctaccagcgctggcagttcaccctgcccatgatgtccaccctgtaccgc
ttggccaaccagctgcttactgaccttgtggatgacaactacttctacttgtttgacctg
aaagcgttcttcacctccaaggcactgaacatggctattcctggaggtcccaagtttgag
cccctcgttagagacatcaaccttcaggatgaagactggaatgaattcaacgacatcaac
aaaattatcatcaggcagccgatcaggacagagtacaaaattgctttcccatacctgtac
aataacctaccacaccatgtccacctcacctggtatcatactccaaacgtcgttttcatt
aaaacagaagatcctgatctcccagctttttactttgatccgctgatcaaccccatttca
cacagacattctgtcaaaagccaggaaccgctgcctgacgacgatgaggagtttgaactg
ccagagtttgtggaacctttcctgaaggataccccactctacacagataacacagccaat
ggcattgccctgctctgggccccacggcccttcaacttgaggtctgggaggacccgcaga
gctctcgatatcccactggtcaagaactggtaccgtgagcactgcccggcaggccagccg
gtcaaagtgcgagtctcctaccagaagctcctgaaatattatgttctgaatgctctcaag
cacagacctcccaaggcccagaagaagaggtacctgttccgctccttcaaggctaccaag
tttttccagtcgacgaagctggactgggtggaagtgggcctgcaggtgtgtcgccagggc
tacaacatgctgaacttgctgatccacagaaagaacttgaactaccttcacttggattac
aacttcaacctgaagcccgtgaagaccctcaccactaaggaaagaaaaaaatcccgtttt
ggtaacgctttccatctgtgccgagaggtcctgcggctgactaagctggtggtggacagc
cacgtccagtacagactgggaaacgtggatgcatttcagctggcagatggtctgcagtac
atctttgcccacgtgggtcagctcacagggatgtaccggtacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctcaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtgtggctgtttttc
atgaggggcatcaccccgctgctggaacgctggctggggaacctactggccaggcagttt
gaaggccgtcactcgaagggcgtcgcaaagactgtcacgaagcagcgtgtggagtctcac
tttgacctggagttgagggcagccgtgatgcacgacatcctggacatgatgccagaagga
atcaaacagaacaaagccagaaccatcctgcagcacctgagcgaggcttggcggtgctgg
aaggccaatattccctggaaggtgccaggcctgccaactccgattgagaacatgatcctg
aggtacgtgaaggcaaaggctgactggtggacaaacacagctcactacaacagggagcgg
atccgccgcggtgccaccgtggacaaaaccgtctgcaagaagaacctgggccggctgacc
agactctacctaaaagctgagcaggaacggcagcataattacctgaaggacgggccgtac
atcactgcagaagaggctgttgctgtgtacacaaccacagtgcactggctggagagcagg
aggttctctcccattccctttcccccgctgtcctacaagcatgacaccaagttgctgata
ttagccctggagaggctgaaggaggcttacagtgtgaaatcacgcctgaatcagtcacag
agagaggaattgggattgattgaacaggcttatgataatccccacgaagctctgtccaga
atcaagcgacaccttttgacccagagagccttcaaggaggtgggaatcgagttcatggat
ctctacagccatttagtccctgtttatgatgttgagcccttggagaagatcacagatgct
tatctggatcagtacttgtggtatgaggctgataagcgaaggctcttccctccgtggatc
aaacctgctgacactgaacctcccccactgttggtgtacaagtggtgccaaggcattaat
aatctgcaggatgtttgggaaacgagtgaaggtgaatgcaacgtgatgctggaatctcga
tttgagaagatgtatgagaagattgacctgacactgctcaacaggctgttgcgtcttatt
gttgatcacaacatcgctgactacatgacagccaagaacaacgtggtcatcaactacaag
gacatgaatcacacaaactcctacgggatcattcgtgggctgcagttcgcttccttcatt
gtccagtattatgggcttgtgatggacctgctggtgctgggtctgcaccgggccagtgaa
atggctgggcctccccagatgccaaatgacttcctcagcttccaggacattgccacggag
gtggcccatcccatccgcctcttctgcagatacattgacaggattcacatcttcttcagg
tttacagctgatgaggcaagagacctgattcagcggtacctgacggagcatccggatccc
aacaacgagaacatcgtaggctacaacaacaagaagtgctggccccgggacgctcggatg
cgcctcatgaaacatgatgtgaacctgggtcgggctgtgttctgggacatcaagaaccgt
ttgcctcggtcggtgaccacggtgcagtgggagaacagcttcgtgtccgtgtacagcaag
gacaaccccaacctgctgttcaacatgtgcggctttgagtgccgcatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggacggggtctggaacctgcagaatgaggtc
accaaggagcgcacagctcagtgcttcctgcgtgtggacgatgagtctatgcagaggttt
cacaacagggtgaggcagatcctcatggcatctggctccacaaccttcactaagattgtc
aataaatggaacacagctctgattggcttgatgacatatttccgggaagctgttgtaaat
actcaggagttgcttgatttgctggtgaagtgtgagaataaaatccagactcgaatcaaa
atcggcctgaattccaaaatgcccagccgttttcctccagtggtgttttacacccctaaa
gagctgggggggctgggcatgctctccatgggccacgttctgatcccacagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcgggaatgagtcacgag
gaggaccagctcatcccaaatttgtatcgttacatccagccctgggaaagtgaattcatc
gactctcagagggtgtgggcagagtatgccctgaagcgccaggaggccatagcccagaac
aggcgtctgacgctggaggatctggaggactcgtgggacagaggaattcctcgtatcaac
accctgttccagaaggaccgacacaccctggcttatgataaaggatggagagtcaggact
gacttcaaacagtatcaggtgctgaagcagaacccgttctggtggacacaccagcgccac
gatggcaaactctggaatctgaacaactaccgcacggacatgatccaggctcttggtggg
gtggaaggaatcctggagcacactctcttcaagggcacttacttccccacatgggagggt
cttttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagctgacaaat
gcccagagatcaggtttgaaccaaattccaaacagaaggttcaccctgtggtggtctcct
accattaacagagccaatgtgtatgttgggtttcaagtgcagctggatttgacaggcatc
tttatgcacggcaagatccccaccctgaagatttccctcattcagattttccgagctcac
ttgtggcagaagatccacgagagcatcgtaatggatttgtgtcaggtgtttgaccaagag
ctggatgctctggagattgagacagtgcagaaggagacgatccatcccaggaagtcatac
aagatgaattcctcatgtgcagacatccttctctttgcttcctataagtggaacgtgtca
cgtccgtcattgctcgcagattccaaggatgtgatggacagcaccaccactcagaagtac
tggattgacatccagctgcgctggggagactacgattcccacgacatcgagcgctacgcg
agagccaagttcctggactacaccacagacaacatgagtatctacccctctcccactggt
gtgctcattgccatcgacctggcctacaacttgcacagcgcttacgggaactggttccct
gggagcaaacccctgatccagcaggccatggccaaaatcatgaaagcaaaccctgccctg
tacgtgctgagggaacggatccgcaaggggctgcagctctactcctcagagcccacggag
ccgtacctttcctcccagaactacggagagctcttctccaaccagatcatctggttcgtg
gatgacaccaacgtgtacagagtcaccatccacaagacttttgaagggaatttgaccaca
aaacccatcaatggagccattttcatcttcaaccccagaactggacagctcttcctgaag
atcatccacacatctgtgtgggcaggacagaagcgtctgggacagctggccaagtggaag
actgctgaagaagtggctgccttgatccgatcccttcctgtggaggagcagccgaagcag
atcatagtgacacggaagggcatgttggacccactcgaggtgcacttgctggatttcccc
aatatcgtgatcaaaggctcggagttgcagctgcccttccaggcctgtctgaaagtagag
aagtttggtgatctcatcctgaaggctactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacggcattctcccgtctgatcctgattctc
cgggcactacacgtgaataatgatcgagccaaagttattctgaaaccagataagacaacc
atcactgagcctcaccacatctggccaaccctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtgaacgtcgca
tccctgacacagtcagagatccgagacattatcctgggcatggagatctcggccccatct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcccagctgaca
gccacccagacccgcaccgtgaacaaacacggggatgaaatcatcacctccaccaccagc
aactacgaaacacagaccttctcctccaagactgagtggcgggtcagagccatttctgct
gccaacctccacctgcggacaaaccacatctacgtctcatcagacgacataaaagagaca
ggctatacctacatccttcccaagaacgtgttgaagaagttcatctgcatctcagacctg
cgggcccagattgcaggttacctgtatggagtgagccctccagataacccccaggtgaag
gagatccggtgcatcgtgatggtgccccagtggggaacacaccagactgtgcatctccca
gggcagctgccacagcacgagtatctcaaggaaatggaacctctggggtggattcacacc
caaccaaacgagtccccccagctctcaccgcaggatgtcaccacccacgccaaggtcatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacaccc
ggctcctgcacactgacagcctacaaactgaccccgagtggctacgagtggggtcggcag
aacacggacaaagggaacaaccccaaggggtacctgccctcccactacgagagagtgcag
atgctgctgtccgaccgcttccttggcttcttcatggtcccagcacaaggctcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagcttcagctcgccaac
cccaaggagttttaccacgaggtccatcgcccctctcacttcctcaacttcgccctgctg
caggagggggaggtttactcggccgaccgcgaggatctctacgcctaa
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integrated database retrieval system
