Empidonax traillii (willow flycatcher): 114061897
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Entry
114061897 CDS
T05887
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etl03036
]
114061897 (DICER1)
Chromosome and associated proteins [BR:
etl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114061897 (DICER1)
microRNA pathway
RISC loading complex
114061897 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Amidoligase_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114061897
NCBI-ProteinID:
XP_027748611
LinkDB
All DBs
Position
Unknown
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEITESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALAFLNDCNLSVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTNETE
TEPIVDDDDVFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISLPNSSVVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDVSAELAAINGVSYNKNLANGNCDLVNRDFCQG
NQLNYCRQEIPVQPTTSYPIQNLYNSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMA
VTTSTSKANNLSKDRAESEKSPSTGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENMLANGKLDDYNDDEENEDLMWRSPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVQCSSEFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTLCATRENCNSEQKNISPNS
VSASVANSEPSLCKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaatggaaaaagaactgtgttcttggtc
aactccgcaaatcaagttgctcaacaagtgtctgctgtcaggacacattcagaccttaaa
gtaggagagtattcaagtttagagataactgaatcatggacaaaagagaagtggagtcag
gaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttctgaga
aatgagtatttatccctgtcaaatattaatcttctggtgtttgatgagtgccatcttgca
atccaggatcacccataccgtgaaattatgaagatctgtgaggattatccatcatgtcca
cgaattttgggattaacagcttccattttaaatgggaaatgtgatcctgctgagttagag
gagaagatccagaaactggagaaaattctaaagagcaatgctgaaactgcaactgatttg
gtggttttagacagatatacttctcagccgtgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttgtatggaagattattaaaggaattggatgaagcacttgctttt
ctaaatgactgcaacctatctgtacattcaaaagaaagagattctaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataag
gtagctgggatgatggtgagagagctgcagaagtatatcaaacacgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatacaaaccatatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaaccaggataattatgtatcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcggttgttctaaataggttg
ataaaagaagctggcaagcaagatccggaactggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaatttagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaatctacttattgccaccagt
attgtagaagagggtgttgacataccaaaatgcaacttggtggtgcgttttgatttgcct
acggagtaccgttcctacgtacagtcaaaaggaagagctagagcaccaatttccaattac
attatgttagcagatacggacaaaatcaaaagttttgaagaagatcttaagacatacaaa
gccattgagaagatcctcagaaacaaatgctcaaaatctgttgataccaatgaaactgaa
actgaacccattgttgatgatgacgatgtatttccaccctacgtattgaggccagatgag
aacagtccaagagttactattaacactgctattggacacataaataggtactgcgctaga
ttaccaagtgatccatttacacacctagctcccaagtgtaaaacccgggaactacctgac
catacgttttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggtcctccaatgagttgtgcaagactggctgagagagttgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggaacttgatttacatgatgaagaagaaaccagtgttccaggaaggcca
ggctctacaaaacgaagacagtgctatcctaaagctattccagagtgcttgagggatagt
tatcccaaacctgatcagccctgttacctgtatgtaataggaatggtgttaacaactcct
ctacctgatgagctcaacttcaggagacgaaaactatatcctcctgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcaaattcctcactttcctgtgtatact
cgctctggagaggttacaatatctattgagcttaagaaatctggttttactctgtctctg
caaatgcttgagctgataacgagactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaaacccacagaagctgattcagcctattgtgttctacct
cttaatgttgttgatgactccagcactttggacattgactttaagtttatggaagatatt
gagaaatctgaggcacgtacaggcattcccagtacacagtatacaaaagaaatgcctttt
attttcaagttagaagattaccaggatgcagttatcattccacggtatcgaaattttgat
cagcctcatcgattctatgtagctgatgtgtacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgctgaatattataaaacaaagtataatcttgacctt
accaatctcaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaagcacttccactaagcagtgctgagaagagg
aaggcaaagtgggaaagtttgcagaataagcagatactggttcctgagctttgtgctata
catcctattccagcatcactgtggagaaaagcagtttgcctccccagcatactttaccgc
ctgcactgccttttgacagcagaggaactaagagctcaaacagccactgatgctggtgta
ggggttaaatcacttcctgcagatttcagatatcctaacttggacttcggatggaaaaaa
tctattgacagcaaatccttcatctctcttcctaactcctcagtagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgcttaatgag
tcacccagtaaactccaaattgatgtctcggcagaacttgcagcaattaatggtgtttct
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctactgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccaaaatggca
gtgaccaccagtacttcaaaagctaataatctttcaaaagacagagcagaatctgaaaag
agcccttccactgggtactcctcaaaaactctcggtcctaatcctggtctcattcttcaa
gctttgactctttcaaatgctagtgatggatttaacctggagcggctagaaatgcttggt
gattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgctcac
gagggacgactgtcatatatgagaagcaaaaaagtcagtaactgtaacttgtatcgcctt
ggaaaaaagaagggactgcccagtcgcatggtggtgtcaatttttgatcccccggtcaat
tggcttcctcctggttacattgtaaaccaggacaagagcaacactgataagtgggagaaa
gatgaaatgacaaaggaaaacatgttggctaatggtaaacttgatgattataatgatgat
gaagagaatgaagacctaatgtggaggtcgcccaaggaagaaacagactttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggg
gcttttgtgaagaaaatttcgctctcacacttttcaaccactgattcaaactatgaatgg
aaagcacccaaaaagtcatccctgggtaatgttcagtgttcatcagagtttgatgatttt
gactatagctcttgggatgctatgtgctatctggatcctagcaaggctgttgaagaggat
gattttgtagtgggcttctggaatccctcagaagaaaactgtggtgttgatgcaggaaaa
cagtcgatctcatatgacttgcatacggagcagtgtattgctgacaagagcattgcagac
tgtgtggaagccctgctgggctgctatctgaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcattggggctgaaggtgctccctgtaattaaaaagactgattgggaaggc
actttatgtgctaccagagagaactgtaacagtgagcagaaaaatatttcaccaaactct
gtttctgcttctgtagctaattcagagccttctctgtgtaaagacctggagtatggctgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctaaatcac
cttatttctggttttgaaaactttgagaagaaaataaattacagttttaagaacaaggct
taccttcttcaggcatttactcatgcctcgtaccattataataccattactgattgttac
cagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccacggcaacactctccaggagttcttactgacctacgatctgctctagtcaat
aataccatttttgcatcattagctgtaaaatatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctcagaagatcggaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccatta
atagaaaaattttctgctaatgtgccccgttccccggtgcgagagctgctggagatggag
ccagagacagccaaatttagtcctgcagaaagaacttacgatggaaaggtcagagttaca
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcgagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
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