Empidonax traillii (willow flycatcher): 114062286
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Entry
114062286 CDS
T05887
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etl03036
]
114062286 (TDRD12)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
114062286 (TDRD12)
Chromosome and associated proteins [BR:
etl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114062286 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
CS
DEAD
Helicase_C
C2-set
Hydrolase_3
Motif
Other DBs
NCBI-GeneID:
114062286
NCBI-ProteinID:
XP_027749353
LinkDB
All DBs
Position
Unknown
AA seq
1239 aa
AA seq
DB search
MNVPQGIVMDVVVLKIEDPSCFWLAVEECVPGLVYEVAYKNLNARMNQFYDRHKGVKELK
PEVIEEGQIYVVFSEELKCWCRAVFQSVQCHALHHPLRCFLVDYARYSLVASDNIRVPLG
LFTKLPYRAKKCSLYCTKPVTLHLDFCENTAKIGPAKRWDTAAIQHFRDLLKEATEVKAM
VQALEDNVFQVFLFVTVKDEKICVNDDLVTKYFARYEEPKGNAEGSADDSDMEASLNAEC
VPVEFVGPTFVPRPKLPFGEKVSPRPETGLRGFSSVLEETCQRPSRVVNENTVPMVNATR
GLPLKENKAVQTDSLPQFLNSDSLQTHTGENDQQFQGFQNLGEGKNFVFLSKKIEPSSVL
KTAPLSDGLKKELVQNKFSGPNFTESYCWPPVASGYDLVAISHQGNDPLLYIPPVLTFLQ
LKSASHALPHSSGPVALIVCPGWRKAQLVFDLLRMYKKGCRDLHPVLITLEQNKEATSRV
ETRGCEVLVTTPHSLLRLLERKSWLLCRLCHLVLDEIEVLLSDTTEQVFTILDCYKKATA
RAWGNPPHQIVAVGTQWNKHIPPLMEEFMNDPYIVITVVEEAAICGNVQQVVQPCRNSSK
IAELLKILDFTHTNLQKVLVFTDSENEVEMIHKALKSNSVVTLKKHKESKCNVSCVSERW
RKMHSSGTPVVLVLTDDCLEPLGITDATCVIHFSFPSLRILGQRLQSMTDTFCTLRKDSS
VDQEHTDARSVILLTGNSPCHAPEILGYLKHAGAEIPQQLHDLAARVLESEESEKLSRPL
CASLKTFGICRNRTACPDRHQINVSIDMAQNIPDEMIKTPERVMILPLHIVHATNYFGRI
VDKEKDQYAILAEEMQNYFKVPGHRTFVDAVEKSAFYGLCEGALCHRVQVVDIPAKEEEN
YDCKVTIKYIDEGRTSQVNSDQLLHLPAKFQSLPPQAVEFIVCRVKPIDNEIEWNPKVTD
HIRHKIKGRLHHAKIVHTLGRTAWVDPVIRVSSLSSVKVWINEYNIRSEILSTGLGTDNP
EHLEEIQKLCRHVLVSDYSKNLEHLSIKESTADLEKVSSPQDTSTEEDSPESCNTSGSYP
CDDIAPTEEAEDSMLHQHKCYHPEIKWFQDNETVTLKVKIPSAADTKCEFSNEKVVFSAR
SGEKLYLADLELQESVFAEKSMCVIKDTEAVIVLAKEKQGAWCKLLKKKNIHVSLDFEHW
EEPEEESSFTVGAGKLTFPAAGSEEWFDSSEYSDTESDE
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgcctcaggggatagtcatggatgttgtggtactaaagattgaagatccaagt
tgcttttggcttgctgtagaagaatgtgtgccaggcctagtctatgaagtggcatacaaa
aacctgaatgctcgaatgaatcagttctatgacagacataaaggtgtgaaggaactaaaa
ccagaggtgatagaagagggccagatttatgtggttttcagtgaggagctcaagtgctgg
tgcagggcggtgtttcagtcggtgcagtgccacgcgcttcatcacccgctcagatgtttc
cttgtggattatgccagatacagtttggtggcatcagacaacattcgagttccattggga
ctatttacaaaactcccatacagagcaaagaagtgtagcctgtattgcacaaagccagtg
acgttgcatcttgacttctgtgaaaacactgcaaaaataggaccagccaaaagatgggat
actgctgctatccagcattttcgagaccttctcaaagaggctactgaggttaaagccatg
gtacaggcactagaagataatgtgtttcaggtgtttctttttgtgactgtaaaagatgaa
aagatatgtgttaacgatgatctggtcacaaagtactttgctcgttacgaggaacctaaa
gggaatgcagagggttctgcagatgattcagacatggaagcatcactgaatgctgagtgt
gttccagtggagtttgtgggtcctacgtttgtccccaggccaaaactgccgtttggggag
aaggtgtcaccccgtcctgaaacaggtcttcgtggttttagttctgttcttgaagagaca
tgccaaaggccaagccgagttgtaaatgaaaatactgtgcctatggtcaacgcaactcga
ggtttgcctttgaaggaaaataaagcagttcaaacagacagccttccacagttcttaaat
tccgattcccttcagacgcacacgggtgaaaatgaccagcagtttcagggttttcaaaat
cttggggaaggaaaaaacttcgtgttccttagcaagaaaattgagccatcatcagttttg
aaaacagcaccactttctgatggtctgaaaaaggaacttgttcagaacaaattttcaggc
cctaacttcaccgagtcttactgttggccgccagtagcttcaggatatgaccttgttgcc
atctcccaccagggaaacgatcctctgttatatattccaccagttcttacatttttgcag
ctgaaaagtgcctcccatgccttgccacactcgagtggaccagtagcccttattgtatgt
cctggatggaggaaggcacaacttgtttttgacctactgagaatgtacaagaaaggctgc
agagaccttcatccagtgttgataacccttgagcagaacaaggaagcgaccagccgtgtg
gaaacccgaggctgtgaagtattagtgactacaccacacagccttctgagactgctggaa
cgcaagagctggttattgtgtagactttgccatcttgttcttgatgagatcgaggtgctg
ttgtctgacaccactgaacaggtgtttactatattagattgttacaagaaggccactgct
cgagcgtgggggaatccaccgcatcagattgttgctgtgggaactcagtggaacaaacac
atcccacccttgatggaggagttcatgaacgatccttacattgtgataacagttgtcgaa
gaagctgccatctgtgggaatgtgcaacaggtcgtgcagccttgcaggaacagcagcaaa
attgctgaattactcaaaatactggattttacccacacgaatcttcagaaggtgctggta
ttcactgactcagaaaatgaagtagagatgattcataaggcactaaagagcaactcagta
gttaccttgaagaaacataaagagagcaagtgtaatgtcagttgtgtctcagagagatgg
agaaaaatgcacagttctggcactcctgttgtgttggttttaacagatgactgcctggag
cccttgggaattacagatgcaacttgtgtgatccatttcagttttccttctctaagaatc
ttgggccagcgcctacagagcatgactgacaccttctgcaccctgagaaaggattcttct
gtagatcaggaacatacagatgccagatcagtcattctgctgacagggaacagtccatgt
catgcacctgagattctgggctatttgaagcatgcaggagctgaaattccacaacagctg
catgatttggctgccagggtgctggaatctgaagaaagtgaaaaattgtcacggcccttg
tgtgcctctcttaaaacatttggcatttgcaggaatagaacagcgtgtccagatcggcac
caaattaatgtatcaatagacatggcccagaatatcccagatgaaatgataaaaacacct
gaacgtgtgatgattctgcctctccacattgtacatgcaacgaactactttggccgaata
gtggataaagaaaaggaccaatatgcaattcttgctgaagaaatgcagaattattttaag
gtaccaggacacaggacttttgtagacgccgtggagaagtcagcattttatgggttatgt
gagggagccctttgtcacagggttcaggtggtagacattccagcaaaagaggaagaaaat
tatgactgtaaggtcacaattaaatatatagatgaaggcagaacaagtcaagtcaatagt
gatcagctgcttcacttacctgcaaagtttcagagtctgccacctcaggctgtggaattc
atagtttgtagagtgaaacccattgataatgaaattgaatggaacccaaaggtgactgat
cacattcgtcacaaaattaaaggaagactacatcatgcaaaaatagtccataccttggga
aggacagcttgggttgacccagtgatcagggtttccagcctttccagtgtcaaggtgtgg
atcaatgaatacaacattcgatctgagattctgtccaccggtctcggaactgacaatcca
gaacatctagaagaaattcagaagctgtgcagacatgtgctagtgtcagattattcaaag
aacttggagcacttaagcataaaggagagcacagctgatcttgagaaggtgtccagtcca
caggatacgtcaacagaagaagattctcctgaaagctgtaatacttctgggagttatcca
tgtgatgatatagctccaacagaggaagcagaagactctatgctgcatcagcataaatgc
tatcatccagaaatcaagtggtttcaagataatgagactgttacactgaaggtaaaaata
ccgagtgcagctgacactaagtgcgagttctctaacgagaaggtggttttcagtgctagg
tcaggagaaaaactttatttggctgacctggaactgcaagagtctgtatttgcagagaag
tccatgtgtgtgattaaggatacagaggctgtgattgttctggcaaaagaaaaacaagga
gcatggtgcaaattactgaagaaaaagaatattcacgtgtctttagattttgaacactgg
gaggagcctgaagaggaaagctcttttacagttggtgctggaaaactgactttccctgct
gcaggaagtgaggaatggtttgactcctcagaatacagtgatacagaaagtgatgaatag
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