Empidonax traillii (willow flycatcher): 114062759
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Entry
114062759 CDS
T05887
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
etl04121
]
114062759 (PDZRN3)
Enzymes [BR:
etl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114062759 (PDZRN3)
Ubiquitin system [BR:
etl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
114062759 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-TRAF
zf-rbx1
TRAF3_RING
U-box
PDZ_Tricorn
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
114062759
NCBI-ProteinID:
XP_027750369
LinkDB
All DBs
Position
Unknown
AA seq
1061 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLVLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSRATHEQAVEAFKTAKEPIVVQVLRRTPRSKAFPPAHDSQLVDVGTQTDI
TFEHIMALSKMGSPTPPVSVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTASNTL
GSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSAN
PYGLYYHNSSLDMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQCREPWM
LHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLR
RTAEGTGCAGNEGAAACGASQKSSFAGSESHEPGAGKCHASAKDPDLGKQLESKERRASD
GSKSPTHGQKPSGSYTSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDFSSGQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAIS
EMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKREMNIIELSHKKM
MKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggaccgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaggtgctggaggaccctctgaccaccccctgcgggcacgtcttctgcgcgggc
tgcgtcctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcacctgggcgagcac
gccgagacctgcgacttctctccggccaagtgccgcaaccgcgggtgccgccaggtgctc
aacctgcgcgatgtggaggcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctggtgctgacccacggcgagcgccgggcgggcggccacggc
tgcctgcgagccctgcgagcccacggggccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggctctgcgcgccggcaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcggtaccagaagcgcttcacg
cagtacagcgcccgcctggacgccctggcccgcgcccgcgccgcctcccccggcaagggg
gaagagactaaagcactgactctcgtcctccatcgtgactctggctctcttggatttaat
attattggtggccgaccgtgcgtggacaatcaagatggttcatcgagcgagggaattttc
gtctcgaaaatagttgacacagggcctgctgctaaggaaggagggctgcagattcatgac
aggattattgaggtcaatgggaaggatttgtccagggccactcacgagcaggctgtggag
gctttcaaaacagccaaggagcccatcgtggtgcaggtgctgaggaggaccccgcgctcc
aaggccttccctcctgctcacgactcccagctggtggatgtgggcacccagacagacatc
accttcgaacacatcatggctctgagcaagatgggctctcccacccctcccgtctccgtg
ctggacccgtacctgctgcctgaagaccatccatcagtgcatgaatactacgatccaaac
gactacatgggaggaatccatcaagaaatggaccgggatgagctggaattagaggaagtc
gatttacacagagtgaacagccaggacaagcttggcctcactgtctgttacaggacagat
gatgaagatgacatggggatttatgtgagtgagattgatcccaacagcatcgcagccaag
gacgggcggctccgggaaggggatcgcattatccagatcaacggcatagaggtgcagaac
cgagaggaagctgtggcgcttctgagcagcgaggagagcaagaatatctccttgcttgtg
gcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaatttactgcc
agcatgcttcagcagaagaagcacgaggaggacggaggcaccacagacaccgccactatt
ctgtccaaccagcacgagaaggacagcggcgtggggcgcacggacgacagcacccgcaac
gacgagagctccgagcaggagaacaacggggacgaccacaccacggcctccaacaccctg
gggagccagaagaagctgacgtacagccacgacaccctgggcagcggcgatatgcagttc
agcaacgagtcgttcatctcggccgactgcacggacgtcgacttcctcggcatccccgtg
gacgagtgcgagcggttccgggagctgctggagctgaagtgccaggtgaagtcggccaac
ccttacggcctctactaccacaacagcagcctggacatgagcaagagcgaccaggagagc
gtggacagagagctggagatgctgaacgaggagctgcgcaacatcgagctggagtgcctg
aacatcgtgcgggcccacaaaatgcagcagctgaaggagcagtgccgggagccctggatg
ctgcacaacagcggcttccgcaactacaacaccagcatcgacgtgcgccggcacgagctc
tcggacatcacggagctcccggagaagtccgacaaggacagctcaagcgcctacaacacc
ggggagagctgcaggagcacgcccctgacgctggagatctcccccgacaactccctgcgc
agaactgccgaaggcacgggctgtgcgggtaacgagggggcagcggcgtgcggtgcctcc
caaaagagttcgtttgccggctcggaaagccacgagcccggcgctggtaaatgccacgcc
tcagctaaagatcccgacctcggcaagcagctggagagcaaggagagaagagccagtgat
ggaagcaaaagccctactcacggtcagaagccctctggctcctacacgtccccctatcac
cactctccgtataagcacgcccacatccctgcccacgcacagcactatcagagctacatg
cagctgatccagcagaaatccgccgtggagtacgcccagagccagatgagcctggtgagt
atgtgcaaagacttcagctcgggccagagcgagccgaggatggagtggaaagtcaaggtg
agaagcgacgggacccggtacatcaccaagaggccggtcagggacaggctgctgagggag
cgtgccataaagatcaaggaggagcgcagtgggatgaccacggatgatgatgccatcagt
gagatgaagatgggccgttactggagcaaggaagagcggaagcagcacttggtgaaggcg
aaggagcagaggaggaggcgcgagtttatgatgcagagcaggttagagtgcttaaaggag
cagcaaggtgcagaagaaaagagagagatgaacatcattgaactgagccacaaaaaaatg
atgaagaagaggaataaaaaaatatttgacaattggatgacaatccaagaactgctaacc
cacggcacgaagtcaccagacggcacacgggtgtacaattccttcctgtcagtgactact
gtataa
DBGET
integrated database retrieval system
