Empidonax traillii (willow flycatcher): 114063335
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Entry
114063335 CDS
T05887
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03420
Nucleotide excision repair
etl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114063335 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
114063335 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
etl04121
]
114063335 (DDB1)
03400 DNA repair and recombination proteins [BR:
etl03400
]
114063335 (DDB1)
Ubiquitin system [BR:
etl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
114063335 (DDB1)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
114063335 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
114063335 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
114063335
NCBI-ProteinID:
XP_027751334
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSSEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKSLVSEWKEPNGKNISVASCNTNQVVVAVGRALFYLEIWPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGSLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactatgtggtgacggcgcagaagccgacggccgtcaatggctgcgtcacc
ggacacttcacctcctccgaggacctgaacctgctgatcgccaagaacacgcggctggag
atctacgtggtgacggccgaggggctgcggcccgtcaaggaggtgggaatgtacggcaaa
accgccgtcatggagctcttccgccccaagggggagagcaaggacctgctgtttatcctg
acggccaagtacaacgcctgcatcctggagtacaagcagagcggcgacagcatcgacatc
atcacccgcgcccacggcaacgtccaggatcgcatcggccgcccctctgagaccgggatc
attgggatcatcgatcccgagtgccgaatgatagggctccggctctacgacggcctcttc
aaggtcattcccttggacagggagaacaaggaattaaaggccttcaacatccgcctggaa
gagctccaggtcatcgacgtgaagttcctctatggatgccaagctcccaccatctgcttt
gtctaccaggaccctcagggccggcacgtaaagacgtacgaggtgtccctgcgggagaag
gaattcaacaaaggcccctggaagcaggaaaacgtggaggccgaagcctccatggtcatt
gcagttccggagcccttcggaggcgcgatcatcatcgggcaggaatccatcacctaccac
aacggggacaaatacctggctattgctcctcccatcatcaagcaaagtaccatcgtgtgc
cacaaccgcgtggatcccaacggatcccggtatttgctgggagacatggaaggaaggctc
ttcatgctgctcctggaaaaggaggagcagatggatggcaccgtcaccttgaaagacctg
cgtgtggagctgctgggagagacatccatagcggagtgcctgacctacctggataacgga
gtggtgtttgttggatccaggcttggagattcccagctggtgaagctcaacgtggacagc
aacgagcagggatcctacgtggtggccatggagaccttcactaacctcgggcccatcgtg
gacatgtgtgtggtggacctggaaagacaagggcaaggacagctggtcacctgctccggc
gccttcaaagagggatccctgcggatcatccgcaacggcatcgggattcacgagcacgcc
agcatcgacctgccgggaattaaaggcctgtggccactgaggtcggatccgcaccgggag
acggacaataccttggtgctctcctttgttggccagaccagggttctgatgttaaatggg
gaggaggtggaagagacggagctcacaggatttgtggatgaccagcagacgtttttctgt
gggaatgtggcgcatcagcagctgatccagatcacctcggcctccgtgcgcctggtgagc
caggagcccaaatccctggtgagtgagtggaaggagcccaatgggaagaacatcagcgtg
gcctcctgcaacaccaaccaggtggtggtggccgtgggaagagccttgttctacctggaa
atctggccccaggagctgcggcagatcagctgcacggagatggagcacgaggtggcctgc
ctggacatcactcccttgggagactccaacgggatgtcccccctctgtgccattgggctc
tggactgacatctctgcccgcatcctgaagctcccgtcctttgaactgctgcacaaggag
atgctgggaggagagattatcccacgctccatcctcatgacgacgtttgagagtagccac
tacctcctgtgtgccctgggggacggagccctcttctacttcgggctcagcctggagaca
ggctcactgagcgaccggaagaaggtgaccctgggcacgcagcccacagtcctgaggaca
ttccggtccttgtccactaccaacgtcttcgcctgctccgaccgtcccaccgtcatctac
agcagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaattccgacggatatcccgacagtttggcgctggccaacaacagcaccctgacc
atcgggaccatcgacgagatccagaaactccacattcgcactgttcccctctacgagtcg
cccaggaagatctgctaccaagaggtatcccagtgttttggggtgctttccagtcggatc
gaggtgcaggatgccagtggaggcaccacggccctcaggcccagtgccagcacccaggcc
ttatccagcagcgtgagcacctccaagctgttttccagcagcaccgctccgcacgaaaca
tcctttggagaggaggtggaagttcacaacctgctcatcatagaccagcacacctttgaa
gtgctccatgctcaccaattcctgcagaatgagtatgccctgagcctggtttcctgtaag
ctgggaaaagatcccaacacctacttcattgtgggcactgccatggtctatcccgaggaa
gccgagcccaagcagggccggatcgttgtcttccactactccgatgggaagttacagagc
ctggctgagaaggaggtcaagggagccgtgtattccatggtagaattcaacgggaagctc
ctggccagcatcaacagcacggtgcggctgtacgagtggacggcagagaaggagctgcgc
acggagtgcaaccactacaacaacatcatggccctctacctgaagaccaagggggacttc
atcctggtgggagacctcatgcgctctgtgctgctcctggcctacaaacccatggaaggc
aactttgaggagattgcccgggatttcaatcccaactggatgagtgctgtggagatcctg
gatgatgacaattttctgggagcagagaacgctttcaacctgtttgtgtgccagaaggac
agtgcggccacgacggacgaggagcggcagcacctgcaggaagtgggattatcccacctt
ggggaatttgttaacgtcttctgccatggatccctggtcatgcaaaacctgggagagact
tccacgcccacccagggctccgtcctctttggcaccgtgaacgggatgatcgggctggtg
acatctctatcagagagctggtacaatctgctcctggacatgcagaacaggctcaacaag
gtcatcaaaagtgtcgggaagatcgagcattccttctggaggtccttccacacagagcgg
aagacggagccggccacgggatttatcgatggggacctgatcgagagtttcctggatatc
agcaggcccaagatgcaggaagtggtggcaaacctgcagatcgacgacggcagcgggatg
aagcgggaagccactgtggacgacctgatcaagatcgtggaggagctcacccggatccat
tag
DBGET
integrated database retrieval system
