Empidonax traillii (willow flycatcher): 114063661
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Entry
114063661 CDS
T05887
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58 isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
114063661 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
etl04054
]
114063661 (DHX58)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114063661 (DHX58)
Pattern recognition receptors [BR:
etl04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
114063661 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_19
AAA_11
AAA_22
cobW
AlaDh_PNT_C
Motif
Other DBs
NCBI-GeneID:
114063661
NCBI-ProteinID:
XP_027751879
LinkDB
All DBs
Position
Unknown
AA seq
674 aa
AA seq
DB search
MELRGYQREAAAPALRGRNSIVWLPTGAGKTRVAVHVCRRHLESRRGGKVAVLVNKVHLV
DQHVEKEFHALQDTFKVTSISGDTSHKVFFAHLVKKSDVVICTAQILQNALVSTEEDMQV
HLTDFSLLVIDECHHTHKDSVYNKIMLRYLQGKLSGQQDLPQVLGLTASPGTGGATSFEG
AVEHILQICANLDTEKITSAQEEMQHLQSHVPQPRKQYDLCQERAQDPFGERLKKVMEQI
HRYMEMPHAPQDFGTQIYEQHVVELEKRASEMFCRKTRACALHLRKYNDALLINDTVRMV
DAFQCLQEFYSTERDEKDPTEQFLTSTFEENREILQALAGNQRYENPRLRKLEEILRDHF
QPLGASRGIVFTKTRQSAHSLLSWLQGTATLCGQHIRAAVLTGAGYSNQTRHMTQNEQQD
VIKQFRAGALNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIAMMQARGRARAENSVYSIL
AKANSKEVSRELLNEDLVKLMERAIQAVQAMPEQEYCRKIRELQEVAVATWLMKKARISE
RRQLHDPGAVYLHCASCGTAVCRGSDIRTVEGMHHVNVNPNFGLYYRVSSGKIQFPRTFK
DWEPGCRISCSECSQDWGMEMLYRQVKLPILCIKNFVVETPAEKRRYKKWSSVTFPIKEF
DYLEYCSDTQGLSF
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggagctccgggggtaccagcgggaggcggcggccccggctctgcgtggccgcaacagc
atcgtctggctgcccacgggcgccgggaagacccgcgtggccgtccacgtgtgccggcgg
cacctggagagccggcggggcggcaaggtggccgtgctggttaacaaggtgcacctggtg
gaccagcacgtcgagaaggagttccacgcgctgcaggacaccttcaaggtaacgtccatc
agcggggacaccagccacaaggtgttctttgcccacctggtgaagaagagtgatgtggtc
atctgcacggcccagatcctgcagaatgcactggtcagcactgaggaagacatgcaggtg
cacctgacagatttctcactgctggtgatagacgagtgccatcacacgcacaaggactct
gtctacaacaagatcatgctgagatatctccagggcaagctcagcgggcagcaggacctg
ccgcaggtcctggggctgacggcgtcccctggcactgggggggcaacctcctttgagggg
gctgtagagcacatcctgcagatctgtgccaacctggacactgagaagatcacgtcggca
caggaggagatgcagcacctgcagagccacgtcccccagcccaggaagcagtatgacctg
tgccaggagagagcacaggaccccttcggcgagcggctgaagaaggtgatggagcagatc
catcggtacatggagatgccgcacgcgccgcaagacttcggcacgcagatttacgagcag
cacgttgtggagctggagaagagagcctcggagatgttttgccgcaagactcgggcgtgc
gccctgcacctgcgcaagtacaacgacgctctgctgatcaacgacactgtgcggatggtc
gacgccttccagtgcctccaggagttctacagcaccgagagggatgaaaaggaccccacc
gaacagttcctcacctccacgtttgaggagaacagggagatcctgcaggcactggccggg
aaccagcgctacgagaaccccaggctgcgcaagctggaggagatcctgcgggatcacttc
cagcccctgggtgcctctcgaggcatcgtcttcaccaagacacggcagagcgcccacagc
ctgctcagctggctgcagggcacggccacgctctgcgggcaacacatcagggctgctgtc
ctcaccggtgccggctacagcaaccagaccaggcacatgacacagaacgaacagcaagat
gtgatcaagcagttccgtgcaggagccctcaacctgctcttctccaccagcgtggccgag
gagggcctggacatccctgagtgcaacattgtggtccgctatgggctgatgaccaacgag
atcgccatgatgcaggcccggggccgtgcccgtgctgagaacagcgtctattccatcctt
gccaaagccaacagcaaagaggtgtcccgagagctgctcaacgaggacctggtgaagctc
atggagagggcgatccaggcggtgcaagccatgcccgagcaggagtactgccgaaagatc
cgggagctgcaggaggtggccgtagccacctggctgatgaagaaggccaggatcagcgag
cggcggcagctgcacgacccgggcgccgtttacctgcactgcgccagctgtggcacggcc
gtgtgccgcggcagcgacatccgcaccgtggagggcatgcaccacgtcaacgtcaacccc
aacttcgggttgtattacagggtttcctctgggaaaatacagttcccgcggactttcaag
gactgggagcccggctgccgtatctcctgcagcgagtgcagccaggactggggcatggag
atgctgtaccgccaggtgaagctgcccatcctctgcatcaaaaacttcgtggtggagaca
ccagcagagaagaggaggtataagaagtggagctcagtgaccttccccatcaaggagttc
gactacctggagtattgctctgacacccagggcctgtccttctag
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