KEGG   Empidonax traillii (willow flycatcher): 114065021
Entry
114065021         CDS       T05887                                 
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
etl  Empidonax traillii (willow flycatcher)
Pathway
etl03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:etl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    114065021 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:etl03400]
    114065021 (LIG3)
Enzymes [BR:etl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     114065021 (LIG3)
DNA repair and recombination proteins [BR:etl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     114065021 (LIG3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase Synaptonemal_3 mRNA_cap_enzyme DUF3802
Other DBs
NCBI-GeneID: 114065021
NCBI-ProteinID: XP_027754396
LinkDB
Position
Unknown
AA seq 983 aa
MPTGCRALSHAARALSGGAGLFSPLARICLPRAFSCCAGLGAGRWCQLLSQPVPLQGGGA
GAFPLSLFLSPWPRQACTAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGVCRIGKIVPN
PFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDEDKELINKHISEAN
SKAGSTPKKKVIVQAKLTATGQLTTKDLASPSPKKFSGFTAKPKNSEAVSANSSHKSSLS
AARCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSGGDGFHGDVYLTIKLL
LPGVIKTVYNLNDKQIVKLFSRIFNCNQDEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLTQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFNYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGSLGVHKKAAFQDANVCLFVFDCIYFNNISLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMIARVIREGLEGLVLKDIKGSYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPESEKWCTVTKCS
GGHDDATLARLQTELDMVKISKNPSKIPRWLKVNKTYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADLSAGAGEEDESTA
GSSGENEGNSRSSTPHSSIKTPPNKSPAKAQKPEESKANLESPQKSEEKRGEKRKASEME
DNGKKHPLLDIFTGVRLYLPPSVRDFDKLRRYFIAYDGDLVTEFDTASATHVIGDTDGNP
GAQRVSPRWIWECIRKRRLVAPC
NT seq 2952 nt   +upstreamnt  +downstreamnt
atgcccacgggctgcagggctctgtcacacgccgcccgggccctcagcgggggcgcgggg
ctgttctcccccctcgcacggatctgcttgcccagagccttctcctgctgcgcgggactc
ggcgccgggcgctggtgccagctgctgtcacagcccgtgcccctgcagggcggcggggcc
ggcgcttttcccctctctctgtttctgagcccgtggccgcgtcaggcctgcacggccgcg
ggggacatggccgagcagaggtactgcgtggactacgccaagcgcggcacggccggctgc
aagaagtgcaaggagaagatcgtgaagggggtgtgccgcatcgggaagattgtccccaac
cctttcacggagtccggcggggacatgaaggagtggtaccatgtcaagtgcatgtttgag
aagctggacaaggcccgggccaccaccaagaaaatcgaggacatcacggacttggagggg
tgggaagagctgcaggatgaggataaagaattaatcaacaagcacatctcagaagccaat
tccaaggctggaagtaccccgaagaaaaaggtgatagtccaggctaaactcactgccaca
ggacaactgactacaaaagatcttgccagtccatcaccaaagaagttctctggcttcaca
gccaagccaaagaattcagaagctgtctctgcaaactcttcccacaagtccagcctgtct
gcagccagatgtgatcccaagcacaaggactgtttgctgcgggagttccggaagctctgt
gccatggtggctgagaagccaagctacaatgtgaaaacacagatcatccaggacttcctg
aggaagggatctggaggagatggttttcatggtgatgtatacttgaccattaagctgctg
ttaccgggtgtcattaaaacagtttacaacttgaatgataagcagattgtgaagctcttt
agtaggatttttaactgcaaccaagacgaaatggtccgggacctggaacagggagatgtt
tccgagaccatccgcatcttcttcgaacagagcaagacttgtcccccagcagccaaaagc
ctcctgaccatccaggaggtcgatgaattcctgacccagctctcaaagctcactaaggag
gatgaccagcaaagtgtgctgcagcagatcagtcgcaggtgtacaggcaatgatctgaag
tgcatcatccggctaattaagcacgacttgaaaatgaacgctggagcgaagcacgtgctg
gacgcgctggatcccaacgcctacgaggcgttcaaggcgtcgcggaacctgcaggacgtg
gtggagcgggtgctgcagaaccagcaggaggccgagaaggtgccggggctgaagcgaacg
ctgagcgtgcaggcctcgctcatgacccccgtgcagcccatgctggctgaagcctgcaag
tccatcgaatatgccatgaagaagtgccccaatggcatgtacgctgagattaaatatgat
ggggagagggtgcaggtccacaaaaacggggatcacttcaactacttcagcaggagcctc
aaacctgtcctgccacacaaagtagcccattttaaggacttcatcccccaggctttccct
ggtgggcagagcatgatcctggattcagaagttcttctgattgacaacaaaactggcaag
ccacttccttttgggagtcttggtgtgcacaagaaagctgctttccaagatgccaacgtt
tgcctctttgtgtttgactgcatctacttcaacaacatcagcctgatggacaggcctctg
tgtgaacgtcgcaagttcctccacgacaacatggtggaaatccccaaccggatcctgttc
tcggagatgaaacacgtcacgaaagcttcagatctggccgacatgatcgcccgagtgatc
cgtgagggactggaaggactggtgttgaaagatataaagggaagttatgaaccaggcaaa
cgacactggctgaaggtgaagaaggactatctcaacgagggggccatggctgacaccgct
gacctggtggtgctgggagctttctatggacaaggcagtaaaggggggatgatgtccatc
ttcctcatgggctgctacgatcccgagagtgagaagtggtgcactgtgaccaagtgctcg
ggtggccacgacgatgccaccttggcgcgcctgcagacggagctggacatggtgaagatc
agcaagaatcctagtaaaattccacggtggctcaaagtaaacaaaacctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcacgggcgctgagttctcc
aaggccgaggcccacactgcagacgggatctccatccgcttcccgcgctgcacccgcatc
cgggacgacaaggactggcaaacggccaccaacctgcagcagctgaaggagctgtaccaa
ctctccaaggagaaggctgatttaagcgctggtgccggggaggaggatgagtccacagct
ggcagcagtggagagaacgaggggaactccaggtcttccacacctcacagcagtattaaa
acccccccgaacaagtcccctgcaaaagcccagaagccagaagagagcaaagcaaacctt
gaatcccctcaaaaatcggaggagaaacgaggggagaagagaaaagcatcggagatggag
gacaacggcaaaaagcacccactgctggacattttcacgggggtgaggctgtacctgccg
ccctccgtgcgggacttcgacaaactgcggcgctacttcatcgcctacgacggggacctg
gtgacagagtttgacacggcctcggccacccacgtcatcggggacactgatggcaaccct
ggtgctcagcgtgtctctcccaggtggatctgggaatgcatccgcaagaggaggctggtg
gccccgtgctag

DBGET integrated database retrieval system