Empidonax traillii (willow flycatcher): 114065021
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Entry
114065021 CDS
T05887
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
114065021 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
etl03400
]
114065021 (LIG3)
Enzymes [BR:
etl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114065021 (LIG3)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
114065021 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
DUF3802
Motif
Other DBs
NCBI-GeneID:
114065021
NCBI-ProteinID:
XP_027754396
LinkDB
All DBs
Position
Unknown
AA seq
983 aa
AA seq
DB search
MPTGCRALSHAARALSGGAGLFSPLARICLPRAFSCCAGLGAGRWCQLLSQPVPLQGGGA
GAFPLSLFLSPWPRQACTAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGVCRIGKIVPN
PFTESGGDMKEWYHVKCMFEKLDKARATTKKIEDITDLEGWEELQDEDKELINKHISEAN
SKAGSTPKKKVIVQAKLTATGQLTTKDLASPSPKKFSGFTAKPKNSEAVSANSSHKSSLS
AARCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSGGDGFHGDVYLTIKLL
LPGVIKTVYNLNDKQIVKLFSRIFNCNQDEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLTQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFNYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGSLGVHKKAAFQDANVCLFVFDCIYFNNISLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMIARVIREGLEGLVLKDIKGSYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPESEKWCTVTKCS
GGHDDATLARLQTELDMVKISKNPSKIPRWLKVNKTYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADLSAGAGEEDESTA
GSSGENEGNSRSSTPHSSIKTPPNKSPAKAQKPEESKANLESPQKSEEKRGEKRKASEME
DNGKKHPLLDIFTGVRLYLPPSVRDFDKLRRYFIAYDGDLVTEFDTASATHVIGDTDGNP
GAQRVSPRWIWECIRKRRLVAPC
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggctgcagggctctgtcacacgccgcccgggccctcagcgggggcgcgggg
ctgttctcccccctcgcacggatctgcttgcccagagccttctcctgctgcgcgggactc
ggcgccgggcgctggtgccagctgctgtcacagcccgtgcccctgcagggcggcggggcc
ggcgcttttcccctctctctgtttctgagcccgtggccgcgtcaggcctgcacggccgcg
ggggacatggccgagcagaggtactgcgtggactacgccaagcgcggcacggccggctgc
aagaagtgcaaggagaagatcgtgaagggggtgtgccgcatcgggaagattgtccccaac
cctttcacggagtccggcggggacatgaaggagtggtaccatgtcaagtgcatgtttgag
aagctggacaaggcccgggccaccaccaagaaaatcgaggacatcacggacttggagggg
tgggaagagctgcaggatgaggataaagaattaatcaacaagcacatctcagaagccaat
tccaaggctggaagtaccccgaagaaaaaggtgatagtccaggctaaactcactgccaca
ggacaactgactacaaaagatcttgccagtccatcaccaaagaagttctctggcttcaca
gccaagccaaagaattcagaagctgtctctgcaaactcttcccacaagtccagcctgtct
gcagccagatgtgatcccaagcacaaggactgtttgctgcgggagttccggaagctctgt
gccatggtggctgagaagccaagctacaatgtgaaaacacagatcatccaggacttcctg
aggaagggatctggaggagatggttttcatggtgatgtatacttgaccattaagctgctg
ttaccgggtgtcattaaaacagtttacaacttgaatgataagcagattgtgaagctcttt
agtaggatttttaactgcaaccaagacgaaatggtccgggacctggaacagggagatgtt
tccgagaccatccgcatcttcttcgaacagagcaagacttgtcccccagcagccaaaagc
ctcctgaccatccaggaggtcgatgaattcctgacccagctctcaaagctcactaaggag
gatgaccagcaaagtgtgctgcagcagatcagtcgcaggtgtacaggcaatgatctgaag
tgcatcatccggctaattaagcacgacttgaaaatgaacgctggagcgaagcacgtgctg
gacgcgctggatcccaacgcctacgaggcgttcaaggcgtcgcggaacctgcaggacgtg
gtggagcgggtgctgcagaaccagcaggaggccgagaaggtgccggggctgaagcgaacg
ctgagcgtgcaggcctcgctcatgacccccgtgcagcccatgctggctgaagcctgcaag
tccatcgaatatgccatgaagaagtgccccaatggcatgtacgctgagattaaatatgat
ggggagagggtgcaggtccacaaaaacggggatcacttcaactacttcagcaggagcctc
aaacctgtcctgccacacaaagtagcccattttaaggacttcatcccccaggctttccct
ggtgggcagagcatgatcctggattcagaagttcttctgattgacaacaaaactggcaag
ccacttccttttgggagtcttggtgtgcacaagaaagctgctttccaagatgccaacgtt
tgcctctttgtgtttgactgcatctacttcaacaacatcagcctgatggacaggcctctg
tgtgaacgtcgcaagttcctccacgacaacatggtggaaatccccaaccggatcctgttc
tcggagatgaaacacgtcacgaaagcttcagatctggccgacatgatcgcccgagtgatc
cgtgagggactggaaggactggtgttgaaagatataaagggaagttatgaaccaggcaaa
cgacactggctgaaggtgaagaaggactatctcaacgagggggccatggctgacaccgct
gacctggtggtgctgggagctttctatggacaaggcagtaaaggggggatgatgtccatc
ttcctcatgggctgctacgatcccgagagtgagaagtggtgcactgtgaccaagtgctcg
ggtggccacgacgatgccaccttggcgcgcctgcagacggagctggacatggtgaagatc
agcaagaatcctagtaaaattccacggtggctcaaagtaaacaaaacctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcacgggcgctgagttctcc
aaggccgaggcccacactgcagacgggatctccatccgcttcccgcgctgcacccgcatc
cgggacgacaaggactggcaaacggccaccaacctgcagcagctgaaggagctgtaccaa
ctctccaaggagaaggctgatttaagcgctggtgccggggaggaggatgagtccacagct
ggcagcagtggagagaacgaggggaactccaggtcttccacacctcacagcagtattaaa
acccccccgaacaagtcccctgcaaaagcccagaagccagaagagagcaaagcaaacctt
gaatcccctcaaaaatcggaggagaaacgaggggagaagagaaaagcatcggagatggag
gacaacggcaaaaagcacccactgctggacattttcacgggggtgaggctgtacctgccg
ccctccgtgcgggacttcgacaaactgcggcgctacttcatcgcctacgacggggacctg
gtgacagagtttgacacggcctcggccacccacgtcatcggggacactgatggcaaccct
ggtgctcagcgtgtctctcccaggtggatctgggaatgcatccgcaagaggaggctggtg
gccccgtgctag
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integrated database retrieval system