KEGG   Empidonax traillii (willow flycatcher): 114067097
Entry
114067097         CDS       T05887                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
etl  Empidonax traillii (willow flycatcher)
Pathway
etl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:etl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114067097
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:etl03041]
    114067097
   03036 Chromosome and associated proteins [BR:etl03036]
    114067097
Spliceosome [BR:etl03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    114067097
 Complex B
    114067097
 Complex C
   U2 SnRNP specific factors
    114067097
Chromosome and associated proteins [BR:etl03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    114067097
SSDB
Motif
Pfam: PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG UME Adaptin_N CEP104-like_TOG UNC45-central DUF2298 T4_baseplate
Other DBs
NCBI-GeneID: 114067097
NCBI-ProteinID: XP_027758105
LinkDB
Position
Unknown
AA seq 791 aa
AALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHK
ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFA
VVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHG
LVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYL
IPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPP
FFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIE
KIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQIC
GTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSI
LGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAR
EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTT
VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLL
EDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGA
LEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKN
TYIRYELDYIL
NT seq 2376 nt   +upstreamnt  +downstreamnt
gctgcgttgcgacaaatcactgataaagctcgggaatttggagcagggccgttgttcaat
cagattctgcctctgctgatgtcaccaacacttgaagatcaggagcgtcacttacttgtc
aaagtcatcgacagaattctttacaaattggatgacttggtccgaccatatgtacacaag
atccttgtcgtcattgaaccactgctgattgatgaagactactatgctagagtggaaggc
agagaaattatttccaacttggctaaggctgctggtttggccacaatgatctccacaatg
cgacctgatattgataacatggatgaatatgtccgaaacacaacagctcgagcctttgct
gttgttgcctctgctctgggcattccttctctgttacccttcttgaaagctgtctgtaaa
agcaaaaaatcctggcaggctaggcacactggcatcaagattgtgcagcagattgctatt
cttatgggttgtgctatcttgcctcatctcaggagcttggttgaaatcattgaacatggg
ctggtggatgagcagcagaaagttcgcaccatcagcgctttggccatcgctgctttggct
gaggcagctactccctacggcatcgagtcatttgattctgtgctgaagcctttgtggaag
ggtattcgtcaacacagaggaaagggtttggctgcctttttgaaggctattggttacctg
attccactcatggatgctgagtatgcaaactactataccagagaagtcatgttaatcctt
atcagagagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtggtaaag
cagtgttgtggtacggatggtgttgaagcaaactacattaaaacagaaatcttgccacct
ttcttcaaacacttctggcagcacagaatggcattggacagaaggaattacagacagttg
gttgatacaaccgtggagctggcaaacaaagtgggagcagcagaaattatttctagaatt
gtggatgatctgaaagatgaggctgagcagtacagaaaaatggtcatggaaacgattgag
aagataatgggaaatctgggggcagcagacatcgatcataaactggaagaacaactgatt
gatggtatcttgtacgcctttcaggaacagacaacagaggattctgtgatgctgaatggt
tttggcacagtggttaatgctcttggcaaaagagttaaaccctacttgccacagatctgt
ggtacagttctgtggcgtctgaacaacaaatcagctaaagtcaggcagcaggctgctgac
ctcatctctcgtactgcagtggtcatgaagacttgtcaagaggaaaaactgatgggacac
ttgggtgttgttttgtatgagtacctgggtgaagaatatcctgaagtactgggcagcatt
ctcggagcgcttaaggctattgtgaacgttataggtatgcacaagatgacgccacccatc
aaagatctgctgccacgtctcacacctattttgaagaacagacatgagaaagtgcaggaa
aattgcattgatcttgttgggcgcattgcagacagaggtgcagagtatgtttctgcaaga
gaatggatgaggatctgctttgaactgcttgaattactaaaagctcacaagaaagctatc
agaagagccacagtgaacacctttggttatattgcaaaagctattggacctcacgatgta
ttggcgacactgctaaataacctgaaagtgcaggaaaggcagaacagagtatgtactacg
gtagcaattgctattgtggctgagacgtgctcacctttcactgtgctgcctgcactcatg
aatgaatacagagttccagaactgaacgtccagaatggcgtgttaaaatctctttctttc
ctgtttgaatacattggagagatgggaaaagattacatttatgctgttacaccattgctt
gaagatgctttgatggacagggatcttgtgcacagacaaacagcgagtgccgtggtgcag
cacatgtctcttggtgtttatgggttcggctgtgaagattccctcaatcatttgttaaat
tacgtgtggcccaacgtgtttgaaacctctcctcacgtcattcaggcggtcatgggggct
ctggagggcctcagggtggccattggtccctgcaggatgttgcagtactgtttacagggt
ttgtttcaccctgccagaaaagtcagagacgtttattggaagatctataattcgatctac
atcggctcacaggatgctctgatagcacactatccgaggatctataatgatgaaaagaac
acctatattcgttatgaacttgattacatcttataa

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