Empidonax traillii (willow flycatcher): 114067179 Help Entry 114067179         CDS       T05887                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism etl  Empidonax traillii (willow flycatcher) Brite KEGG Orthology (KO) [BR:etl00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:etl03400]     114067179 (SPG11) DNA repair and recombination proteins [BR:etl03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      114067179 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Peptidase_M13_N Motif Other DBs NCBI-GeneID:  114067179 NCBI-ProteinID:  XP_027758258 LinkDB All DBs Position Unknown AA seq 2422 aa AA seqDB search MEAAMAPPELRVLLAPRSLEPRGAPRDAARVRLSRAQDALGTLLGPGGISVEPLAAGGAG RARGTALPGRWADFVWENTEDEGLEENKSKLLALGQSRGLFVYELSVEDGKYSLNSLHSC KEETLKKLLEAKNMSLPSVLSVKILSFGNNKCKLLLNQFILVHLTFPGEDSPSETCDCFT LDLPPEVLGRITDSYFCRGILFLLDSAGWIYIFDCFDGASLGRISVALCQGEGQAGGRSP ALPSPLTALRVSQDLSVAVVLSAAHCALSLGLDSYFRRFPEHLLCKRDPESLPMEPPEGL DEDELGSSEYSMELLSSPFRTDRSWKAHLSSLWDRVRRRRPGSPHLGNDLNLPWYQFFTH LEDHDPEIYEDPEKMVAFVPRAVTWAASRTLHSHGTNLEGEGQQWTQIPGGAPQEVVKVE CKLVTGAKAVFVVVTKDMGLSLALWDFESHDVTCSHFGTNSVYVECSAELPLCLLLTERG LFLVLFGVTQEEFLNRLMMFGSAGVVDSVCHLNGWERCSIPIHALEAGLENRQLDTVDLF LKSKESAFSLSAPCPGPGQCRDAASQTYLRNLEELRPALNLLCSAIQENDMEPHSKHFSE QLLNLTLTFLTRQLEEIFVHTQEPDEFLQKAADILTDYIIKLRKFLRRYPRPQINPVHAG DKLDEDLPEIEESHVWEKLTAEEVIAEAILSNKMPEAQIFFRMHQHPAENLQEFIQTGLN LVYDRLLKDNTREASELLRNMGFDVKQELHKICFYTVDKHVRDLLVKVLREENYFSEKEK RMIDFVHQVESFYSESFQENKEIQSLSRFSAWRKNQDVSRGAAVLDSVLGWDRHRARSHR LRLTFDWARWWDELTQEMILLPRKPRQELKACSPEVLWMHLTAQHDWLSICSWLEESEPR QALCGAAAWPPLTPDIVDQNTLCNSYMRHEILNKLARNGIFVPSELEDFELLLQRLSCLG GVLQIPHPVPKYSSASGLDFHAQFVLHCLQHNLQYLLYTYLDYYSLTPSNCPILEKKELH EAHPWFEFLVQCRGVASNPRDPKMIFQASLANAQILIPSNQASVSSILLEGRTLLALATT MYSPGGIDQVLQNEDAEKPLKKVDPQLLKMALTPYPKLKAALFPSCAAHGILPPDISLYH LLQSLVPFDPSKLFGWQSTNTLAVSDAASELPHFSCPELVNRHAVLERLDFLYYLHHGRP SFAFGTFLVQQLVKSKTPKQLIQQAGKEAHVLALSSFSAPSVGAACVCFLELLGLDSLKL RVDLKVANMIFSYRTRNEDSHHSQIRDSLVEKLTKLADGEKAAAAAILPSLEEAFWDAVE HQGIKRTSSDSRRQWALVMQFCKLHSIGLSTSYLRECARSSDWLQFLLQSHLYGHQPGQV ISILQDFPPTLRDHLALALGRLLCAEGRAVAQGRAADSLFQVLLQCQGSPSPWQHLLAAG LREQAPVLSVLAACVPDASIIPCLCVWIITSVDVATRAEATNQIQSSAENHQWDLQDLSV IWKVFLRKQKSKTLLNGFQLFLKDSPLLHILEMYELCMNCKKYIEAKTKLDKFQESLSKL KTGEEPAAPEFPVPWLESQALFLLELMMQQCRTDYELGKLLQLFAAAENLLLDGPYVRKL CALSEALKDSSISINRSILTSSSLETFQRECRSILEQLQGKGMFCLAREVAALAELPVDS VVTQEVLRDLHHLREVGQWHQTQTRAEFWKKCNDTFLKHSISSQAAASFFLDQANAVLES SGEEGVTSIMERHLLLTLAGHWLAKDTSVSLQQLEEVEKQLWMCRIAQGASRAAEGSERS PCPSPAAVSRDVSFDSLAKEFSFSKLPALNSPVYLELGAVALEPGQALAGAEETALRGLV GVLLDEGSVHEASRVCRYFQCCHRDLALVLHCRALASGQAGLDELRPDIRALLEHGHGRS SAEGPPEGRAPGTSSAEDWTQLVAPCAADDEVVASLKALTEQCVHGRNYCRQVLCLYELS KELSCSFSEISVQDPEKVLRAILAGRGPERGRRAQAFIACQGLQPGAVAQLLAEEITQEL LAPAEGKGQKQVLNPAVESQAFLELAKLCQDHTLVGMKLLDKIASVPRGELSCITELLIL AHKCFSLTCHMEGITRVLQAARLLTDQHLAPREEYGLVVRLLTGIGRYNEMSYIFELLHQ RQHFEVLMRKKLDPSGTLKTALLEYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAART QLKLIESRPWEESLQDVANLKKLLLKALTLFIDAAESYSKDSCVRQSLRCRRLTRLITLQ LHFLGSGQSTRIINLGRQDLMDTILALPRFYQAAIVAEAYEFLPDWAEVLHQQVITKGDF TYLEEFKQQRPLRPGLFEEVAKKVKQHPPADAALKNLKRFLAHCEDIYTYYRLAYDHKFY DVANSLLKDPQTGCCLNDLLSS NT seq 7269 nt NT seq  +upstreamnt  +downstreamnt atggaggcggcgatggccccgccggagctccgcgtgctcctggcgccccgctccctggag ccgcggggagccccgcgggacgcggcccgggtgcggctgagcagggcccaggacgcgctg ggcacgctgctgggccccggcggcatctccgtggagccgctggcggcgggcggtgccggg cgggcccggggcacggccctgccggggcgctgggctgacttcgtgtgggagaacacagaa gatgagggtttggaagaaaacaagtcaaaactcctggctcttggacaaagtcgtggactg tttgtctatgaactctctgtagaagatggaaagtacagcctaaactccctgcacagttgt aaggaagagacacttaaaaagctcctcgaagctaaaaacatgagtctgccttctgttctc tctgtgaagattctgtcctttggaaacaacaagtgcaaacttctgctcaaccagttcatc cttgtgcatctaacctttcctggggaagactcaccctcagagacctgtgactgcttcacc ctggatttgcctccagaggttttggggagaataacagactcctacttctgcagagggatc ctgttcctgttggacagtgctggctggatttatatattcgactgctttgatggtgccagc ttaggcaggatcagtgtggccctgtgccagggagaggggcaggctgggggcaggagccca gccctgccatcccccctcactgccctgagggtgtcccaggatctcagcgtggccgtggtg ctcagtgctgcccactgtgccctctccctggggctcgacagctacttcaggcggtttcct gagcacttgctctgtaagagagatcctgaaagtcttcccatggagcctcctgaagggctg gatgaggatgagcttggcagttctgagtacagcatggagctcctgtcctcacctttccgc acggacaggtcctggaaggcacacttgtcctcactgtgggacagagtaagaagaagaaga ccaggttctccacatctggggaatgacttgaatttgccttggtatcagttttttacccat ctggaagatcatgatcctgaaatttatgaggatccagagaagatggtggcctttgtccca cgggctgtcacgtgggcagcttccagaaccctccacagccacggcacaaaccttgagggt gaaggacagcagtggacacaaatccccgggggagcaccgcaagaagtggtgaaagtggag tgtaaactggtcactggggctaaagctgtgtttgtggtggtgacaaaggacatggggttg tctcttgctctctgggattttgagtcccacgacgtgacgtgttcccactttggcaccaac agtgtttacgtggagtgcagtgcagagctgccactgtgtctgctgctcacagagcgtggt ctgttcctggttctgtttggtgtgacccaagaggagtttttgaacagactgatgatgttt ggcagcgctggagtcgtggattccgtttgtcacctcaatggatgggagagatgttccatt ccaatccatgccctggaggcaggtttggaaaatcgccagctggacacagtggacttattt ttgaagagcaaggaaagtgctttcagtctctctgctccctgccctgggcctgggcagtgc agggatgctgcatcccagacctacctgagaaatttggaagagctcaggccagctttaaac ttgctttgctcagcaatccaagagaacgatatggagcctcacagcaaacacttctctgag cagctcctgaacctcaccctgactttcctcaccaggcaactggaagaaatctttgtgcac acacaggaacccgatgagttcctgcagaaggctgcagatattctgactgactacattatt aaactgaggaaattcctgagaagatatcctcgcccacaaatcaacccagtgcatgcagga gataagctggatgaagacctgcctgagatagaagaaagccatgtgtgggaaaagctgaca gcagaggaagtcattgccgaggccatcttaagcaacaaaatgccagaggcccagatcttc ttccgaatgcatcagcatcctgctgagaacctgcaggagttcattcagacgggtttgaac ctggtctatgaccgtctgctgaaggacaacaccagggaggcctcggagctgctccgaaac atgggcttcgatgtgaagcaggaattgcacaagatctgtttctacaccgtggataagcac gtcagggatctgctggtgaaagttttacgggaagaaaattatttttctgaaaaagagaag agaatgatagactttgtgcatcaggttgaaagcttttactcggaatccttccaggaaaat aaagagattcagtctctttccaggttcagcgcgtggaggaagaaccaagacgtttccagg ggggcagcagtgctggactcggtgctgggctgggacagacaccgggcccgcagccacagg ctccggctcaccttcgactgggctcggtggtgggatgagctcacgcaggaaatgattctg ctccccaggaaaccacgccaagagctcaaggcatgcagtcctgaggttctttggatgcac ctgacggcccagcatgactggctgagtatttgttcctggcttgaggagtcagagcccagg caggctctgtgtggagcagctgcctggccccctctgactccagacatcgttgaccagaac acgctgtgcaacagctacatgagacatgagatcctcaacaagctggccagaaatggaatt tttgtcccttctgagctggaagattttgagctcctgctccaaagactgtcgtgcctcggg ggagtcctgcagattcctcaccctgtcccaaaatacagctctgccagtggcttggacttc cacgctcagtttgtcctccactgcttacagcacaatttgcagtacctgttatacacctac ctggactattacagcttaaccccttcaaattgccctattttggagaagaaggagctgcac gaagcacatccctggtttgaattcctggtgcagtgtcgaggggttgccagtaatccccga gatcccaagatgattttccaggcgagtctggcaaacgctcagatcctgattcccagcaac caggccagtgtgagcagcatcctgctggagggcaggaccctgctggccctggccaccacc atgtactcccctgggggcatcgaccaggttcttcagaatgaggatgcagaaaaaccccta aagaaagttgatccacagctgctaaaaatggccttgaccccttaccccaagctcaaggct gctctctttccctcctgtgctgctcatggaattttaccacctgacatctctctctaccat cttcttcagtcattggttccctttgatccctcgaaattatttggctggcagtcaacaaac actcttgctgtatcagatgcagccagtgagctccctcacttctcgtgccccgagctggtg aacaggcacgcggtgctggagcgactggatttcctctactacctgcaccacggccggccc tcctttgcctttggcaccttcctggtccagcagctggtgaagagcaaaacccccaaacag ctgatccagcaggcagggaaggaggcccatgttttagccctgtcctccttcagtgccccc tcggtaggagcagcctgtgtgtgtttcctggagctgctgggcctcgacagcctcaagctc agggtggacctgaaagttgcaaacatgattttcagctacagaactagaaatgaggactct catcacagtcagatcagagactctttggttgaaaagttaacaaaattggctgatggtgaa aaagcagcagcagcagcaattcttccctccttggaagaagccttctgggatgcagttgag catcagggaataaagaggacatccagtgactccaggaggcagtgggcattggtcatgcag ttctgcaaactgcacagcatcgggctgagcacgtcctacctccgggaatgtgccagatcc agcgactggctgcagttcctgctgcagagccacctgtacggccaccagccggggcaggtc atttccatcctccaggatttccctcccaccttgcgggatcacttggcgctggccctgggg aggttgctgtgtgccgagggcagggctgtggcccagggcagagctgcagacagtctgttc caggtgctgctgcagtgccagggcagccccagcccctggcagcacctgctggctgcaggg ctgagggagcaggctcctgtgctcagcgtgctggctgcctgtgtgccggatgcaagcatc atcccctgtctctgtgtttggatcatcacctctgtggatgttgccaccagggctgaggca acaaaccaaatccagagctcagcagaaaaccaccagtgggacctgcaggacctctcggtt atctggaaagtcttcttaaggaagcagaaaagtaaaacacttctaaatggctttcagctg tttttaaaggattcccctttgctgcacatcctggagatgtatgaactgtgtatgaactgt aaaaagtacattgaagctaaaaccaaactggacaagtttcaggaaagtctctcaaagctc aaaactggagaagaaccagcagcccccgagttccccgtgccatggctggaatcacaagca ctgttccttctggagctgatgatgcagcaatgtaggacggactatgagttgggaaagctc ctacagctctttgctgcagcagaaaatctcctcctggatggcccttacgtgaggaagctc tgtgccctcagtgaggccctgaaggattcctccatatccattaaccgctccatcctgacg agttccagcctggagacgttccagagggagtgcaggtccattctggagcagctgcagggg aaggggatgttctgcctggcccgggaggtggcggctctggccgagctgccggtggacagc gtggttacacaggaggttctgagagatctgcatcatttaagagaggttggacagtggcat caaacccagaccagagcagagttctggaagaagtgcaacgacaccttcctgaaacattcc atctccagccaagccgcggccagttttttccttgatcaggcaaacgcggtgttggaatcc tcaggggaggagggggtaaccagcattatggagagacacctgctgctcaccctggccggc cactggctggccaaggacacctctgtgtccctgcagcagctggaagaagtggagaagcag ctgtggatgtgtcggatcgcacagggagcgtcccgggcagccgagggctcggagcggtcc ccgtgtccctcccccgccgcggtgagcagggacgtgtcctttgacagcctggccaaggag ttctcgttctccaagctgcctgctctgaactcccccgtgtacctggagctgggggctgtg gctctggagcccgggcaggctctggccggcgcggaggagacggcgctgcgggggctggtg ggggtcctgctggacgagggcagcgtgcacgaggccagcagggtctgcaggtacttccag tgctgccacagggacctggccctggtgctgcactgcagggccctggcctcggggcaggcg gggctggacgagctgcggccggacattcgggccctgctggagcacggacacggccggagc tcggctgagggacccccggagggcagagccccaggcacctccagcgcagaagactggacc cagctggtggctccctgtgcggcagatgatgaggtggtggccagcctgaaggctctcaca gagcagtgtgtgcacggcaggaactactgcaggcaggttctgtgcctctacgagctctcc aaggaactgagctgctccttcagcgagatctctgtgcaggaccccgagaaggtgctgagg gccatcctggcggggcgcgggcccgagcggggccgccgggctcaggccttcatcgcctgc caggggctgcagcccggggctgtggcacagctgctggccgaggagatcacccaggagctg ctggcacctgcagagggcaaaggacagaagcaggttctgaaccctgcagtggagagccag gcattcctggagcttgccaagctgtgccaggatcacaccttggttggcatgaagttactg gataaaattgcctctgtcccgcgtggggaactgtcgtgcattacagaattgctgatcctg gcccacaaatgcttcagtctgacttgccacatggaagggatcacccgggtcctccaggca gcgcggctcctcaccgaccagcacctggctcccagggaggagtatggactggtggtgcgg ctgctcacgggcattggcaggtacaacgagatgagctacatcttcgagctgctgcaccag aggcagcacttcgaggtgctcatgaggaagaaactggacccgagtgggacgctgaagacg gcgctgctcgagtacatcaagcgctgccggcccggggacagcgagaagcacaacatgatc gccctgtgcttcagcatgtgcagggagatcggcgagaaccacgaggctgccgcccgcacc cagctcaaactcatcgagtcccggccctgggaggagtctctccaggatgttgcaaattta aagaagctgctgctgaaagctctgactctcttcattgatgcagcagaaagttactccaag gactcgtgtgtgcggcagtccctgcgctgccgccgcctcaccaggctcatcacgctgcag ctgcacttcctgggctcggggcagagcaccaggatcatcaacctgggcaggcaggacctg atggacaccatcctggccctgcccaggttctaccaggcagcgatcgtggccgaggcctac gagttcctcccggactgggctgaggttctgcaccagcaggtgatcaccaagggggacttc acctacctggaggagttcaagcagcagaggccactgaggcccggcctgttcgaggaggtg gccaagaaggtcaaacaacacccccctgctgacgctgctctgaagaacctgaagcggttc ctggcccactgtgaggacatttacacctactacaggctggcctacgaccacaagttctac gatgtggccaattccctgctgaaggaccctcagaccggctgctgcctcaatgacctgtta tccagctga

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