KEGG   Empidonax traillii (willow flycatcher): 114067360
Entry
114067360         CDS       T05887                                 
Symbol
IFT140
Name
(RefSeq) intraflagellar transport protein 140 homolog
  KO
K19672  intraflagellar transport protein 140
Organism
etl  Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:etl00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:etl03037]
    114067360 (IFT140)
Cilium and associated proteins [BR:etl03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   114067360 (IFT140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_HPS5 WD40_Prp19 TPR_IFT80_172 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd TPR_GEMI5 TPR_COPA_B WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Clathrin Consortin_N Rax2
Other DBs
NCBI-GeneID: 114067360
NCBI-ProteinID: XP_027758534
LinkDB
Position
Unknown
AA seq 1405 aa
MAVYVDHRTDAPDSVASPSLIAWHPLHPLLAVASISTAAGGCVDIYLEQGEHVSDSHVER
SFQVTLLAWHPSRPILAAGWEMGEVVVLNKQEKEQHTVPPDHSTKITVLSWSTSGTCLVS
GDEHGVLFLWKVDHRGRVQGPALVKQDYGKCLGHCVFRPLPPGQDLVQLAKAAVSGDEAA
LDMFNWRKAGKGSPLKMAVQEGLSFFITLTDGSVHYVNEKGKTRQVLSTDSLVRKLLLLE
ERDILLVITENLQLSLYALTPEGEADELMKVKLSGKTAHSADIILIDHSLVVTALGETVI
RFWDLDRDENYMLSPDVQFGFEGGECINCVSYCSAKGLLAAGTSKGRVAMWRKTAGSDQS
TRALEGKEKWKFQASTELEGNVTQIKWGSRKNLLAVNSLSSVVILSEQAMSAHFHQQVAV
VQVSPNLFNVTTFSTGATHSLRVDMNVNGVFATKDALVFWNGKQVIVFECSGDTFRSAGS
FPCDSPVLSVHGENLYTVEPYRVQVRTWQGTVKQLLVFSEAEGSPCLLDVCGNFLAVGTD
LAHLKIFDLSRREAKVHCNSKDLSQLLPGRGGIASVKCNANGSKVSILLSKADGNIDSKI
CFYDVDMDKVMVFDFKAEQGDGGEKLFAGQGIGKSVVEYPELHNHIPACHFWDQYEPRLF
VCEAVPETGLQSSDQKKAESTMDVWIISFFSTEEHGLLLQDSFPLPSSYEVLLGIEVPHY
YFAKKLGDAENGAAEPGSATVSQMVARRPMRDFIGLGDCDKTTQDAMLNFSFYLTTGDMD
EAFKSIKLIKSEAVWESMARMCVRTQRLDVAKICLGHMGHARGAKALREAEQEPEPEARV
AVLAIQLGMLEDAERLYKACGRFDLLNKFYQASNQWQKALEMAEAQDRVHLRTTHCSYAK
HLEAAGEQSLALTHYEKSDTHRFEVPRMLSEDLQALENYVNKMKDKSLWKWWAQYLESQS
DLESALQYYALAQDYFSLVRVHCFQGNLQKAAEIANETGSWAASYHLARQYESQEDIRQA
VHFYTRAQAFNNAIRLCKANNLDDQLMNLALLSSPEDMIEAACYYEEKGEQMDRAVMLYH
KAGHFSKALELAFATQQFGALQLIAEDLDEKSDPALLARCSKFFVEHAQYEKAMELLLTA
KKYHEALQLCLEQNLTITEELAEKMTVSKGSQDLPEEARRELLEQIADCCMRQGNYHMAT
KKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQREIYIMAANYLQSLDWRKDAKIIANI
ISFYTKGRALDLLAGFYDACAQVEIDEYQNYEKAHRALAEAYKCLSKTKARSPVEQESKL
AHLQSRMTLMKRFIHAQRAYRCLEEMQKRIPASHLSYFVSPETLEAVLRGAGVPMSPALA
TAHAGHGSVDNREVEEEVADEVEDS
NT seq 4218 nt   +upstreamnt  +downstreamnt
atggctgtgtatgtggatcatcggacagacgctcccgattccgttgcctccccttccctc
attgcgtggcacccacttcacccgctcctggcagttgcttccatcagcacagcagctggg
ggctgtgtggatatctacctggaacagggagaacatgtgtctgactcacatgtggagaga
agctttcaggtcacactgcttgcctggcacccttccagacctatcctggcagcaggatgg
gagatgggagaagtggtggtgctgaacaaacaagaaaaggagcagcacactgtacccccc
gaccacagcaccaaaatcacagtcctgagctggagcacgagtggtacctgcctcgtgtct
ggggatgagcacggtgtcctgttcctgtggaaggtggaccaccgaggccgagtgcagggc
cctgccctggtgaagcaggactatgggaaatgcctggggcactgtgtctttcggccactc
cctcctggccaggacttggtacagctggcaaaagcagctgtgagtggtgatgaggcggcc
ttggatatgtttaactggaggaaagctggaaagggatcccctctgaaaatggcagtccag
gaaggactctccttctttatcactttgacagatggttctgtgcactacgtgaatgagaaa
ggaaagacaaggcaggtgctgtccactgacagtctggtccgaaagctcctgttgctggag
gaaagagatattttacttgtaataacagagaacttgcagttgtccttgtatgcacttacc
cctgagggagaggcagacgagctcatgaaggtgaagttgagtgggaagactgctcattct
gcagacatcattctaatagaccatagcctggttgttacagcactaggggagacagtcatc
aggttctgggatttggaccgagatgagaactatatgctctccccagatgtgcaatttggc
tttgaaggaggagaatgtattaactgtgtgtcttactgcagtgctaaagggctcttggcg
gctgggacgagcaaagggagagtggcgatgtggaggaaaacagcaggatccgaccagagc
acaagggctttggagggcaaggagaagtggaagttccaggcatccacagaacttgaggga
aatgtcactcagataaagtggggctcccgaaaaaacctgctggcagtgaacagcctgagc
tccgtggtgatcctcagcgaacaggccatgtcagcgcattttcatcagcaggtggccgtg
gttcaggtgtctcccaacctgttcaatgtgaccaccttcagcacaggagccacgcacagc
ctccgtgttgatatgaatgttaatggagtctttgctactaaggatgctctagtgttctgg
aatgggaagcaggtgattgtctttgagtgttcaggagataccttcagaagtgcaggctct
tttccttgtgactctccagttctatccgtgcatggagaaaatctgtacacagtggagcca
tatcgggtccaggtccgcacctggcagggcacagttaagcagctgctggtgttctctgaa
gcagagggcagtccgtgcctcctggatgtctgtgggaatttcctggctgtgggaactgat
ttggctcacttgaaaatcttcgatctctcgcgcagagaggccaaagtgcactgcaacagc
aaggacttatcccagctgctccctggccgtgggggcatcgcgtctgtcaagtgcaatgcc
aatggcagcaaagtcagcatcctactcagcaaggcagatgggaacattgattccaagatt
tgtttctatgatgttgacatggacaaagttatggtctttgatttcaaggctgaacaggga
gatggtggagagaagctttttgctggacaaggcattggcaagtctgtagtggagtatcca
gagctgcacaatcacatccctgcttgccatttctgggaccaatatgaaccaaggcttttt
gtatgtgaagcagttcctgaaacaggactccagtcttcagaccagaagaaggctgagagc
accatggatgtttggattatatcattcttcagcactgaagagcatggccttttgctgcag
gacagctttccattgccttcatcctatgaggttctgctgggcatagaggtgccacattat
tactttgcaaaaaagctgggagatgctgagaacggagcagcagaacctggctcagctacg
gtctctcagatggttgcaaggagacccatgagagattttattggcttgggagactgtgat
aagaccacccaggatgccatgctgaacttcagcttctatctgaccactggagacatggat
gaggccttcaaatccatcaagctgataaaaagcgaggccgtctgggagagcatggctcgc
atgtgtgtgaggactcagaggctcgacgttgccaaaatctgcctggggcacatgggccac
gccagaggagccaaggcgctgcgggaggcggagcaggagccggagcccgaggccagggtg
gccgtgctggccatccagctgggaatgctggaggacgcggagcgactctacaaggcctgc
ggacggttcgacctcctgaacaagttctaccaggcctccaaccagtggcagaaggccctg
gaaatggccgaggcccaggaccgggtccacctgcgcaccacccactgcagctacgccaag
cacctggaggcagcaggggagcagagcctggcactcacccactatgagaagtcagacaca
cacaggttcgaggtgccccgaatgctctctgaagacttacaagccctggagaactacgtc
aacaagatgaaagacaagagcttgtggaagtggtgggcgcagtacctggagagccagtca
gacctggagtctgcgctacaatactacgcactggctcaggattacttctccctcgtccgt
gtccactgctttcagggcaaccttcagaaggccgctgagattgccaacgagacggggagc
tgggcagcctcctaccacctggcacggcagtacgagagccaggaggacatcaggcaggcc
gtgcatttctacacccgggcacaggccttcaacaacgccatccgcctctgcaaggcaaac
aatttagatgatcagctgatgaacctggctctcctgagctcgccagaagacatgatagag
gcagcctgctattacgaggagaagggggagcagatggacagagctgtcatgttataccac
aaggcaggacacttctccaaagccctggagctggcctttgccacgcagcagttcggggcc
ctgcagctcattgctgaggacctggatgagaagtcagaccctgccctgctcgcccgctgc
tccaagttcttcgtggaacatgctcagtatgagaaggcaatggagctgctgctcacggcc
aagaagtaccacgaagctctgcagctctgcctggagcagaacctgaccatcaccgaggag
ctggctgagaagatgacagtctccaagggctcccaggacctccccgaggaggctcggagg
gagctgctggagcagattgccgactgctgcatgagacaaggcaactaccacatggccacc
aagaaatacacacaagcaggaaacaagttaaaggctatgagggcgctgctgaaatctggg
gataccgagaaaattgtcttctttgcgggagtttccagacagagagagatttacatcatg
gcagccaactacctgcagtcgctggactggcgtaaggacgcaaagattattgcgaatatc
atcagcttctacaccaaaggaagggccctggacctcctggcaggtttctatgatgcatgt
gctcaggtagagattgatgagtatcagaactatgagaaagcccacagagcgctggcagaa
gcctacaagtgcctttccaagacaaaggccagaagccctgtggaacaggaaagcaaactt
gcccacctgcagagcaggatgaccctgatgaagcggttcatccacgctcagagggcttac
cgctgcctggaagagatgcagaagagaattccagcctcccacctgagctacttcgtgtcc
ccagagaccctggaggccgtgctgcgaggggcaggcgtgcccatgagcccagctctggct
acagcacacgccggccacggcagcgtggacaacagggaggtggaagaagaagtggctgat
gaagtggaggactcctga

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