Empidonax traillii (willow flycatcher): 114067521
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Entry
114067521 CDS
T05887
Symbol
PAN3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114067521 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114067521 (PAN3)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114067521 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
114067521 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Pkinase
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
114067521
NCBI-ProteinID:
XP_027758841
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MNSSGLPCSSPSPVVGPPPPPGVGVAGPAAGGAGAAGGGGGAVKLKFCRYYAKDKTCFYG
EECQFLHEEPGAAPAGPGPAAPPPLGGLPLGIPPPAAAAAGPGYPPHGASSGPAAAVVGP
KKAELGAGGGGGGGGGGGGLDGPRLAIPGMDGGGLADANLTDSYFSTSFIGVNGFGSPAE
TKYPMMQRMTNSSSSPSLLNDSAKQYAGHDPLTSPNSSLFNDFAALSVSQRRKLAKPAFP
SFITDLEDRYNTVLPRKYRLGMLDERIVPVGSKARKSKNPIGCLADRCKTGVPINMVWWN
RVTENNLQTPNPSASEFIPKGGSTSRLSNVSQSSMSAFSQALFSHPSMGSPATAGLAPGM
SLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTSASASVANAVSQPPSTGQVIQK
ETVGGTTYFYTDTTPAPLTGMVFPNYHIYHPAAPHVAYMQPKANAPSFFMADELRQELIN
RHLITMAQMDQADIPAVPAEVDSYHSLFPLEPLPPPNRIQKTSNFGYITSCYKAVNSKDD
LPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAFGEHSLVFAYDFHAGG
ETMMSRHFNDPSADSYFTKRKWGQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAG
LACRVMDPTKILVTGKTRLRVNCVGIFDVLTFDNSQNNPLALMAQFQQADLISLGKVVLA
LACNSLSGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRLRSVNDIMPMIGARFYTQ
LDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRD
HLFHQVTEAGTPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTF
QELIAAANGQL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagcggcctgccctgctcgtcgccgtcgccggtggtggggccgccgccgccg
ccgggggtcggcgtggcggggccggcggccggcggggcgggggccgccggcggcggcgga
ggggccgtgaagctgaagttctgccgctactacgccaaggacaagacctgcttctacggc
gaggagtgccagtttctgcatgaggaaccgggcgccgcccccgccggcccggggcccgcc
gccccccctcctctcggcgggctcccgctcggcatccccccgcccgccgccgctgccgcc
gggccgggatacccgccccacggggccagctcgggcccggcagcggcggtggtggggcct
aagaaagccgagctgggggcgggaggcggcggcggcggaggcggcggcggcggggggctg
gatggcccgcggctggcgattcctggaatggatggcggtgggttagctgatgctaatcta
acagattcctactttagcaccagcttcattggcgttaatggatttggaagtcctgctgaa
acgaagtatcccatgatgcagaggatgacaaatagcagcagctcccctagccttctcaat
gacagtgccaagcagtatgcaggccatgatccactgacttcaccaaattcatccttgttt
aatgactttgctgccctcagcgtgtctcaaaggaggaagctggcaaaaccagcatttcct
tcgtttatcactgacttggaggacagatataatacagtcttgcccaggaagtatcgactg
ggaatgctggatgagaggatagttccggtgggatcaaaagcaagaaaatcaaagaaccct
attggctgtctggctgacaggtgtaaaacaggagtacccatcaatatggtttggtggaac
agagtcacagaaaacaatttacagacaccaaatccttctgcaagtgagtttattcctaaa
ggaggatcaacctctaggctgagtaatgtatcccagtcaagtatgtctgccttctctcaa
gccttgttctctcacccctctatgggaagtcctgctactgctgggctagcaccaggaatg
tcactgtcagcaggatcttctcctcttcattctcccaaaataactcctcatacatctcct
gctcctcgaagaagaagtcatactcctaacccagcaaattatatggtgcctactagtgcc
tctgcgtctgtcgctaatgctgtctctcagcctccatctactggccaggtgatccagaag
gaaacagtgggtggaacaacatacttctacactgatacaactccagcacctctcacggga
atggtatttccaaactaccacatctaccatccagctgcgcctcatgttgcttacatgcag
ccaaaagcaaatgcaccttccttcttcatggcagatgagctcagacaggaactgatcaac
agacacctaataactatggcccagatggatcaggctgatattcctgcagttcctgcagaa
gtggacagctaccacagtctcttccctttggaaccactgccaccacccaatcggatacag
aaaacaagcaactttgggtacattacatcatgctataaagctgtaaatagcaaagatgac
ctgccgtattgccttcggaggatacatggttttcgtcttgttaacacaaagtgcatggta
ttggttgacatgtggaaaaaaattcagcactcaaatatcgtaactttgcgcgaagtgttt
accactaaagcttttggagaacattctcttgtgtttgcctatgattttcatgctggagga
gagactatgatgagcagacacttcaatgaccctagtgctgattcctatttcacaaaacgg
aagtggggtcagcatgatggacctctaccacggcagcatgctggattgcttccagagtct
ttgatatgggcatatattgtgcagctcagctctgcattacggaccattcatacagcagga
ctggcgtgcagagttatggatccaacaaagattctagtaacaggcaaaacaagattacga
gttaattgtgttggaatttttgatgttttgacatttgacaacagtcaaaataatccactg
gcattaatggctcagtttcagcaagcagatttgatctccctggggaaagttgtgttggct
ttggcttgcaattctttatcaggaattcagagggagaatttgcagaaagcaatggaactg
gtgacaatcaactattcctctgatctgaagaatctgattttgtatttgctgactgaccag
aacaggcttcgcagtgtaaatgatatcatgcctatgattggtgcacgattctatactcag
ttggatgctgctcaaatgcgaaatgatgttatagaagaagacctagcaaaggaggtgcaa
aatggaaggttgtttaggctcctagcaaaattgggaacaatcaatgagaggcctgagttt
cagaaggacccaacgtggtcagaaactggagacaggtatttactaaagctctttcgagat
caccttttccatcaggtgacagaagcgggtactccttggattgacctcagtcacattatc
tcatgtcttaacaagttagatgctggtgtgccagaaaaaataagcctcatttccagagat
gagaagagtgtacttgtggtaacttacagcgatttaaagcgctgctttgaaaatactttt
caagaactgattgcagccgcaaatggtcagttgtag
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