Empidonax traillii (willow flycatcher): 114067804
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Entry
114067804 CDS
T05887
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03008
Ribosome biogenesis in eukaryotes
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114067804 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
114067804 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etl03021
]
114067804 (XRN2)
03019 Messenger RNA biogenesis [BR:
etl03019
]
114067804 (XRN2)
03009 Ribosome biogenesis [BR:
etl03009
]
114067804 (XRN2)
03016 Transfer RNA biogenesis [BR:
etl03016
]
114067804 (XRN2)
Transcription machinery [BR:
etl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114067804 (XRN2)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
114067804 (XRN2)
Ribosome biogenesis [BR:
etl03009
]
Eukaryotic type
Pre-60S particles
RNases
114067804 (XRN2)
Transfer RNA biogenesis [BR:
etl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
114067804 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
114067804
NCBI-ProteinID:
XP_027759284
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKESMETAEEKQKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHELKDCQGLPREKQGKHDQFADTLPVAEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHERQNSTTSASPNTSL
TPDGSPSLGGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKFAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQG
KLTLNDNAVLPDQVVESPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMLRDRGMPGMYPNAVPLG
AYGGPYARPLLGGQQQIPKLLSNLRPQESWRGPTPLFQQTPQRGAGAAPLLAWNRMLQSP
NQFQPGQYQGLGPMGYPQRPEDRMDRGRQAYGPGRPYPLPPPAGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccggcgttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtggaggagaaggctaaggagtgcaatggagtcaaggttcccatcgacaccagcaaa
cccaaccccaacgaggtggagtttgataacctctacttggacatgaacggcatcatccac
ccttgcacacatccagaggacaagccagcacccaaaaatgaagatgagatgatggtcgcc
attttcgagtacattgacaggatcttcaacatcgtgaggcccaggaggctcctttacatg
gccatagatggagtggccccccgtgccaaaatgaatcagcagcggtcgaggaggttcagg
gcgtcgaaggagagcatggagactgctgaggagaaacagaaaataagacaagaaattctg
gccaaaggtggctttctccctccagaagaagtgaaggagagatttgacagcaactgcatt
accccggggactgagttcatggacaatctggcgaaatgcctgcgctattacatcgctgac
cgcctcaacagcgacccgggctggaaaaacctcaccgttattttgtcggatgccagtgct
ccaggtgaaggggaacataaaatcatggattacattaggaggcagagagctcaaccaaat
catgacccaaacactcaccactgtctgtgtggggctgatgctgatctgattatgcttggc
ttggctacacacgaaccaaacttcactataattagggaagagttcaaaccgaataaaccc
aagccatgtgctctctgcaaccagatgggtcatgagcttaaggattgccaaggtttgccc
agagaaaagcaaggaaagcacgaccagtttgccgacacccttcccgtggcagaacaggaa
ttcatcttcatccgcttgtgcgtcctgagagagtatttggagagggaactcaccatggcc
agcctgccgttcacgttcgatttcgagagaagtgttgatgactgggtcttcatgtgcttc
ttcgtggggaatgactttctgccccacctgccatctctggagatcagggagggagcaatc
gaccgcttggttaacatctacaaaaacgtggtgcacaaaactggggggtacctcacagaa
agcgggtttgtcaacctgcagcgggtccagatgatcatgttggcggttggagaagttgag
gacagcattttcaaaaagagaaaagatgacgatgataactttaaaaggcggcagaaagaa
aaaaggaaaaggttgaagagggatcagccttctttcattcctggcgggcagttttcccct
caagccctgggaaatcgatccagccctcaggcaatctgtaaccccagacaagctgccttt
gagatgaggatgcacgagagacagaactctacaacttcagcatctccaaataccagcctg
actcctgatggcagcccgtccctgggaggaggaattaagcggaaagctgaggacagcgac
agtgaacccgagccagaggataatatcaggctgtgggagacgggctggaagcagcgctac
tacaaaaacaagttcgacgtggatgcctccgacgagaagttccggcgcaaggttgtgcag
tcctacgtggaagggctgtgctgggtcctcagatattattaccagggctgtgcgtcctgg
aactggtattaccctttccactatgccccctttgcttctgacttcgaggggattgcagac
atgccttcagattttgagaaaggctccaaaccgtttaagccccttgaacaacttatggga
gtgtttccagccgcgagtggaaacttcctgccgcccacgtggaggaagctcatgacagac
ccggaatcaagcatcattgacttctaccctgaagattttgctattgatttgaatgggaag
aaattcgcttggcaaggtgtcgccttattgcccttcgtcgacgagcgccgcctcagagct
gccctggaggaggtgtaccccgacctcacccctgaagagagcagaaggaacagcctcggt
ggtgacgttctctttgttgggaagcaccacccgctctgtgactttattgtggaacagtac
aagaccaaaaatacagagcccgtggacatccccccggagctgtgccacgggatccagggg
aagctcaccctcaacgacaacgccgtgctcccggaccaggtggtggagtctcctgttccg
atgctgcgggatctcacccagaattctgcagtcagcatctccttcaaagatccacagttt
gctgaagactttgttttcaaggctacagtgttacctggggcaaagaaacctgctccggtt
ctgaagccgggagactgggaaaaaaccaacaacgacggcaggccttggaggccacagctt
ggcttcaaccgagacaggaaaccggtgcacttggaccagtcggcctttagaaccttgggc
cacacgatgctgagggacagagggatgccgggcatgtatcccaacgccgtgccgctcgga
gcctacggcggcccctacgccaggcccctgctgggcggccagcagcagatccccaagctc
ctgtcaaacctgcggccgcaggagtcgtggcgaggccccacgcccttgttccagcagacc
ccgcaaaggggtgctggagctgctcctctcctcgcctggaaccgcatgctgcagtccccc
aaccagttccagccggggcagtaccaggggctgggacccatggggtacccccagagaccc
gaggatcgcatggacaggggcagacaggcgtacggccccgggaggccctacccgctccct
cctcccgcaggaaggtacagctggaattag
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