Empidonax traillii (willow flycatcher): 114068089
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Entry
114068089 CDS
T05887
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
etl04147
]
114068089 (COL18A1)
00535 Proteoglycans [BR:
etl00535
]
114068089 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
etl00536
]
114068089 (COL18A1)
Exosome [BR:
etl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114068089 (COL18A1)
Proteoglycans [BR:
etl00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
114068089 (COL18A1)
Glycosaminoglycan binding proteins [BR:
etl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114068089 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114068089
NCBI-ProteinID:
XP_027759782
LinkDB
All DBs
Position
Unknown
AA seq
1938 aa
AA seq
DB search
MARPRLGFLLLLASCFSSEAQFLDWIRDSVKSTGSPAAPGEAIPTSEPLPSAAAPAPSLP
PGMWGDEMVRNVTTPQRQEPDPATAAPVGEGTSAKTAEQRDRNVTGLVESTARPSIAPAR
SASPAPGQGVLSSSTEDPELLGVGTTEDMLGSGATEDPQLLGSGTTEDLQILRMGTTKDQ
QLLELGTTESPQLLEMGNTKDPQLLGTGATEDLQVLGAGSNKDLQLLRAGTTKHPQLGIR
NTKDPRLLGTGTTEDPQLLGTGTTEDPQLLGTGTTKDPQLLGTGTTKDPKFLRTGTSKNL
QLLGIGTTENPQLLGMRTTEDPQLLQAGTAVDLQLLGMRNTENSQLLRTVTTEDPQPLRT
GTTKNSELLGTGTPTAMETWMSLQRPGGPQPGSAPFPFSPGDSTHEQAVPFQDPVAQPPH
HHHEASPNLRHGTGHWGLALASTNRSQSSPLPNQRVDNGVNPPLADNSSPPEFDLLAATA
RLYGSSGAGLPPSFPGLMPSASHCLPIPAHLPFCSVLGTSHVRLPNYLGHSSEEEIRAAL
HEWEGLLESRCHRYLEWFLCLLLLPGCSASVPITPPPCQGFCEAVRDLCWTHLAGGLLPL
PCDALPEEDEGYSCVFINASAENLSAEVSLLELIGDPPPEEILKIYGPDNNPGYVFGPNA
NTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGKQK
IIFYYTEPGSPGSYPAATFTVPTLLNQWTRFAISVEEDEVVLYLDCEEHERVRFERSPDE
MELEDGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDSEVSGDFGSGAE
GGHQPLGKVGGVPGLLDAVPVTSPPVAGGSGPRSSGGSPQQAERTRAEETLRVSTGGSGP
KGEKGEKGERGLKGDAGTGGVMGTSSVKGQKGEKGDLGIKGSAGFGYPGSKGQKGEPGDP
GPPGTLSRHADGSVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGMPGE
PGLKGEKGDPGVGPRGPPGPPGPPGPPGPSSSRNDKLTFIDMEGSGFGGDLESLRGPRGP
PGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPPGPAGPQGPPGRDGEAGQP
GPKGERGDVGDLGLPGIPGPKGNKGEPGPAGPPGETGLAGLPGPMGPRGQPGPPGPPGPP
GPGYEAGFGDMEGSGLSFTPGPPGPEGPQGVPGLPGLKGEVGSPGQPGLPGPKGDAGMPG
VDGRPGLEGFPGPQGPKGDQGSPGEKGERGQDGVGLPGPPGPPGPPGQVISVSGEDRSLV
AFPGLEGRPGHAGFPGPVGPKGDQGATGPQGSPGLKGEKGEPGVIISPDGTVVTAKVKGE
KGEPGLRGPMGPAGPQGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGLRGPPGPPG
PPGPPGPPGSIAYNSGNTFSDSSHPALPAFPGFHQFPGQKGEKGDAGPPGPPGHFPYDPA
HFGTNLRGDKGDTGPKGEKGEPGSTPLYSPSVSGLPGPPGPQGYPGLPGPKGDSIVGPPG
PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGPPGSSGISL
GLRAVPTYQVMLSTAHELPEGSLVFLTDRQELYVRLRGGFRRVLLEEHNLIPSSALDNEV
YDKPPTLHYAGTQPRGPLHPLRNHVPPPTARPWRGDEVVANQHRLPEQPLLHHQHELLNS
YYIHRRPDPAPVAAHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVGLAGTF
RAFLSSRLQDLYSIVRRADRAAVPIVNLRDEVLFNNWEALFTGSGAPLRAGARILSFDGR
DVLRDAGWPQKSVWHGSDAKGRRLPESYCETWRTEERAVTGQASSLTSGKLLEQVASSCQ
QAFIVLCIENSFMTAAKK
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggcccgacctcgcttggggtttctgctcctgctggcgagctgcttctcctccgaagcg
cagttcctggactggattcgggacagcgtgaagagcacgggaagcccagcagcaccgggc
gaggcaatcccgacctcggagccgctgccctcagcggcagctcctgctcccagcctgccc
ccagggatgtggggtgatgagatggtgaggaatgtcaccaccccgcagcggcaggagcca
gatcccgctacggcagcgcctgtgggcgaggggacctcagccaaaaccgcagagcagcgg
gacaggaacgtcacagggctggtggagagcacggcacggccaagcatcgctcctgcccgc
agcgcctcacctgcccccggacagggtgtgctcagcagctccactgaggacccagagctg
cttggagtggggaccaccgaggacatgctggggtcaggggctactgaggacccacagctc
ctggggtcagggaccactgaggacctgcaaatcctgaggatggggaccaccaaggaccag
cagcttttggaattaggtaccactgagtccccacagctcctggagatgggaaatacaaag
gacccacagctcctgggaacaggggccactgaggacctgcaggtcctcggggcagggagc
aacaaggatctgcagctcttgagggcagggaccaccaagcacccgcagctggggattagg
aataccaaggacccacggctcctggggacagggaccaccgaggacccacagctcctgggg
acagggaccaccgaggacccacagctcctggggacagggaccaccaaggacccacagctt
ctggggacagggaccaccaaggacccaaagttcctgaggacagggacctccaagaatctg
cagctcctggggatagggaccactgaaaacccacagctcctggggatgaggaccactgaa
gacccacagctcctgcaggcagggaccgctgtggacctgcagctcctggggatgaggaac
actgagaactcacagctcctgaggacagtgaccactgaggacccacagcccctgaggaca
gggaccaccaagaattcagagctcctggggacagggacccccacagcaatggagacatgg
atgtccttgcagagaccaggaggtccccagccaggtagtgccccttttcctttctcacca
ggtgacagtacccatgagcaggcagtgccattccaggaccccgtggcacaacctccccat
caccaccacgaagcatcaccgaacctacggcacggcacgggccactgggggctggccctg
gccagcacgaacaggagccagagctcccccttgcctaaccagagggtggataatggtgtg
aatcctcctcttgctgataactccagtcctcctgagttcgatttactcgccgccactgcg
cggctctacggtagtagtggcgcggggctcccaccctcctttcctggactgatgccatca
gccagccactgcctgcccatcccagcccacctgcccttctgcagcgtgctgggcaccagc
catgtccgattgccaaattacctcgggcacagcagcgaggaggaaattcgggcggctttg
catgagtgggaggggctgcttgagtcgcggtgccatcgctacctggagtggttcctctgc
ttgctgctgctccccgggtgtagtgcctcggtgcccataacccccccgccgtgccagggc
ttctgcgaggccgtcagagacctgtgttggactcatttggccggtgggctcctgcctctg
ccttgcgatgctctacctgaggaggatgaagggtattcttgtgtctttattaatgcttcc
gcagagaacctgagcgccgaggtcagcctgctggagctgatcggagacccgccgccggag
gagatcctcaaaatttatggccccgacaacaaccccggctacgtcttcggtcccaacgcc
aacacgggccaggtggcccggtaccacctccctagccccttctacagggacttctccctc
ctgttccacatccagcccacgacccctcgggccggcgtgctctttgccgtcacggactcc
tcgcagagcatcatctacgtgggcgtcaagctctcggagctgcgggcgggcaagcagaag
atcatcttctactacacggagccgggctcgcccggctcgtacccggcagccaccttcacc
gtgcccaccttgctcaaccagtggacgcgcttcgccatcagcgtggaggaggacgaagtc
gtcctctacctggactgcgaggagcacgagcgggtccggtttgagcgctccccggatgag
atggagctggaagacggctctgggctctttgttgctcaggctggaggggccgaccctgat
aaataccagggggtcattgccgacctgaagctgcgaggggacccgcgggcggccgagcgg
cagtgcgaggaggaggaggacgactccgaggtctccggtgatttcggcagcggggcagaa
ggtggacaccaacccctggggaaggtggggggtgtcccagggctgctggatgctgtccct
gtcacctctccccccgtggcggggggcagcgggccaaggagcagtggggggtccccgcag
caagctgagaggaccagagcagaggagaccctgcgggtctccacgggaggcagcggcccc
aaaggtgaaaagggagagaagggcgaacgtggcttgaaaggggacgcggggactggtggt
gtcatggggacaagcagtgtcaagggccaaaagggggagaagggagacctgggcatcaag
ggcagtgctggatttggctaccctggctccaagggccaaaaaggggaaccaggtgacccc
ggcccacctggcacgctctctcggcacgccgatggttcggtggtggagcaggtcactggg
ccaccagggccaccagggaaagatggagcccctggcagggatggcgagcccggagaccct
ggcgaggatggcaaacctggcgatatggggccccaggggttccctgggatgccaggggag
ccaggtctgaagggggagaagggtgacccaggcgtggggccaagggggccccctggacca
cctggccccccgggaccaccaggaccctcctcctccaggaacgacaagctgaccttcatc
gacatggaggggtctggcttcggcggtgacctggaaagcctgcggggtccgcgtgggccg
cctggtcccccggggccgcctggcgtgcctggtttgccaggagagccaggacggtttggg
atgaaccgcacggacctgccagggccaccggggctgccaggcagggatgggatccccggg
cctccagggccagcgggtcctcagggtcctccaggaagagacggggaggctgggcagcca
gggcccaaaggagagcggggtgacgtgggtgacctcggcctccccggcataccaggaccc
aagggcaacaaaggagaaccaggaccagctggacccccaggagaaacaggtttagctggc
cttcctgggcccatgggaccccgagggcagccagggccccctgggcccccaggaccacca
gggccaggctacgaggctggatttggtgacatggagggctcggggctgtcattcacccct
ggaccacccggacctgaagggccacagggggtgccaggactgccagggttgaagggagag
gttggtagccctggacagcccggcttgccaggcccgaagggagatgctggcatgcctggc
gtggatggccgtcctggcctggagggcttccctggaccacagggacccaaaggtgaccag
ggcagccccggtgagaagggagagcgaggacaggatggtgtggggctgcccggcccccca
gggccacccggtccccctggacaggtcatctctgtctcgggtgaagataggtctttggtg
gcttttcctggtctagagggcaggccaggccacgccggcttcccgggtccagtgggaccg
aaaggagaccagggggcaactggtccccagggctccccagggttgaagggggagaagggc
gagccaggtgtcatcatcagccctgacgggaccgtggtcactgcaaaggtgaaaggagaa
aagggcgagccggggctgcgaggaccaatgggaccagcaggtccccaggggcgagcaggg
atgaaaggagagatcggctttccgggcagacccggacgtcctggcatgaacgggctgaag
ggtgagaagggcgaccccgcagacgtgctgggcttgcggggtcccccaggacccccagga
cctcctgggccccctgggccacctggcagcatagcctacaacagtggcaacaccttcagc
gactccagccatcccgcactgccagcgtttcctggtttccaccagttcccaggacaaaag
ggagagaaaggtgatgccggacccccaggacccccagggcacttcccctatgacccagct
cactttggcaccaacctgcggggcgacaagggggacacaggtcccaagggtgagaagggt
gagccgggcagcaccccactctacagtcccagcgtctctgggctgccagggcccccaggg
ccccagggataccccgggctgccgggtcccaagggggacagtatcgtcgggccaccaggg
cctcctggacctcagggtccccctggcattggatacgaggggcggcagggcccccctggc
cctcctggcccccctggtccaccctccttcccaggtccccacaggcaagctatcagcatc
cctggacccccaggaccaccaggcccccccggacctccaggcagtagcgggatatccctg
gggctccgcgccgtgccgacgtaccaggtgatgctgagcactgcccacgagctgcccgag
ggcagcctcgtcttcctgactgaccggcaggagctctatgtccgcctgcgcgggggcttc
cgacgggtgctgctggaggagcacaacctgatccccagttcagctctggacaacgaggtg
tacgacaagccacccaccctccactacgccggcacccagccccgcgggcccctgcacccc
ctccgcaaccacgtccccccacccaccgcccggccctggcgtggggacgaggtggtggcc
aaccagcaccgcctgcccgagcaacccctgctccaccaccagcatgagcttctcaacagc
tactacatccaccgccggccagatccagctcccgtggccgcccacgtgcaccaggacttc
cagcccgctcttcacctggtggccctgaacaccccgctcagcggaggcatgcgcggcatc
cggggcgccgacttccagtgcttccagcaagcccggcaggtcgggctggccggcacgttc
cgcgccttcctctcctcgcgcttgcaggatctctacagcatcgtgcgcagggctgaccgc
gccgctgtccccatcgtcaatctccgggacgaagtgctcttcaacaactgggaggccctt
ttcacgggcagcggggctccgctgagagccggcgcccgcatcctctccttcgacggccgg
gatgtcctgcgggatgcgggatggccacagaagagcgtgtggcacggctcggatgccaag
ggccggcgcttgcccgagagctactgcgagacgtggcggacggaggagcgcgccgtcacc
ggccaggcttcctcactgacctccggaaaactgctggagcaggtggccagcagctgccag
caggccttcatcgtcctctgcatcgagaacagcttcatgactgccgccaaaaagtga
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integrated database retrieval system
