Empidonax traillii (willow flycatcher): 114068529
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Entry
114068529 CDS
T05887
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
etl00536
]
114068529 (COL13A1)
Glycosaminoglycan binding proteins [BR:
etl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114068529 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114068529
NCBI-ProteinID:
XP_027760524
LinkDB
All DBs
Position
Unknown
AA seq
802 aa
AA seq
DB search
MEGMLEEKSWKGVDEAAFDRGCVTPPRTGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLY
FRTSDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLDEKLKFHLPRHREVRDTH
QRCNCPAGPPGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGHPGQKGETGATGPRGQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQI
LTLKGEQGQAGIQGPPGPPGPPGPAGPAGPEGTPGRPGPVGPPGRAGEPGKPGRDGKGLP
GPPGPKGEAGIQGYPGRKGEVGESGLPGARGLPGASGPKGEKGDAGIKGERGMPGLPGRH
GSKGAPGMAAAGMKGEPGTPGEKGDPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGLPG
PKGDKGIAENALVGAKGEPGPPGLPGPPGPKGEAGDVGRPGAAGSQGEKGERGSPGDQGP
MGPRGPKGEPGKDEIMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPG
PPGHDGEKGPRGKPGEMGPPGPHGLPGKDGPPGIKGEPGHAGVRGEKGDKGEPGQTGSPG
LDGPTGEKGERGDQGMPGPSGLPGPIGLPGLTGEKGEPGERGDKGNPGESISGPPGPQGP
PGPPGLQGVPGPKGEAGIDGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGV
AGPAGPKGERGSKGDPGVAGPMGPAGLPGLQGLPGDKGIRGERGKKGSRGSKGDKGDQGA
PGLDAPCPLGEDGLPVQGCWNK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggagggaatgttggaagagaagagctggaaaggcgtcgacgaagcagcttttgacagg
gggtgtgtgactccccccaggaccggcgatggggagagatgctgccgcctccctctcctg
ctgggctcggggctgcccggcgtctccctgctttctctggtgctgagcctcctgctgtac
tttcggacctccgatctgcagtcccgggtgtcccacttggaagcggacagacccacacag
ctccctgcctggctctcagcagaccaaatggagacagctattttgggaagagttgaccaa
ctgcttgatgagaaattgaagtttcacttgccgagacatcgagaagttcgagacacacac
cagcgatgcaactgcccagcaggtccgcctggagacaaaggtgcgatggggatccctggg
cggccgggactaaaagggcaatctggagaaaagggtgctccaggagaagccggcatgtct
atcatcgggccccgcggtccgcccggacagcctggaacaagaggttttcctggattcccg
ggccctattggcttggacggcaaaccgggtcatcctggacagaagggagagacgggtgct
acaggtcccaggggacaacctggacccccaggacaaaaaggagaaaagggtcagtgtgca
gagtacccgcacagggaatacctaagtaccacccttgcagccctgcgctctaaccagatc
cttacgctgaagggtgaacaaggacaagcagggatccaaggtcccccagggccccctgga
ccaccagggcccgctggaccggctggacctgagggaaccccaggacgtcctgggccagtt
ggaccccctggcagagcaggagaacctgggaagcctggcagagacggaaagggcttacct
gggcctcctggaccaaagggagaggctgggattcagggataccctggcagaaagggtgag
gtgggcgagtccggcctgcccggtgcccgtggcctccctggagcctctggccccaagggt
gaaaaaggggacgctggcataaagggggagagaggcatgccagggctgccgggaagacat
ggctctaagggcgctcctgggatggccgccgcggggatgaagggcgagcctgggactcca
ggagaaaagggagatcctggagtcccagggaggatgggccccccaggtttgccagggaag
agggggcagcggggtgagaagggacgagctggtgaccctgggcttcctggactccctggg
ccaaagggagataagggaattgctgagaatgccttggtgggagctaaaggagaacctggc
cctccaggtctgcctggaccccctggaccaaagggagaagctggtgacgttggccggcct
ggtgctgcagggtcacagggagaaaagggggaacgtggttcaccaggagaccagggaccc
atgggcccaaggggccccaaaggagagcctgggaaggatgaaattatggactatgatggg
aacatcagtgaagctctccaggaaataagaactctggccttgatgggacccccaggactt
ccaggtgtggctggacctccagggccaccaggacagaagggtgaaattggcttgccaggt
cctccaggccacgatggagagaagggaccacgtggcaagcctggagaaatgggcccccct
ggccctcacgggctgcccggaaaggatggacccccaggaataaagggagagccaggccat
gctggggtcagaggagagaagggtgataagggagagccaggacaaacaggctcaccgggt
ctagatggccccactggagagaaaggcgaacgaggtgaccaagggatgccaggaccgtca
ggattgccgggtcccattggacttccaggactgacaggagagaagggtgagcctggggaa
cgtggagacaaaggaaatccaggagaatcgatatctggcccccccggaccccaaggccct
cctggacctccaggtcttcagggcgtcccaggacccaagggggaagcagggattgatgga
gtgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactgggattaccc
ggtgcttcaggtttagacggcaggcctggaccaccgggtactccaggaccaattggggtt
gcaggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagttgcagga
ccaatggggccagcagggcttcctggtttacaaggtctgcctggtgacaagggaatccgg
ggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaaggagcg
cctggattagatgcaccctgtccgttgggggaagacgggcttccagttcaaggctgctgg
aataagtga
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