Empidonax traillii (willow flycatcher): 114068748
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Entry
114068748 CDS
T05887
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl04382
Cornified envelope formation
etl04510
Focal adhesion
etl04512
ECM-receptor interaction
etl04518
Integrin signaling
etl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114068748 (COL4A4)
04518 Integrin signaling
114068748 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114068748 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114068748 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114068748 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
etl04147
]
114068748 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
etl00536
]
114068748 (COL4A4)
Exosome [BR:
etl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114068748 (COL4A4)
Glycosaminoglycan binding proteins [BR:
etl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114068748 (COL4A4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114068748
NCBI-ProteinID:
XP_027760904
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWCLLMVFAAQGTSGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGDLGAQGPIGSLGSAGPAGLPGEKGLRGENGQPGPAGQKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKPGLDGYNGSRGDPGFPGENGYMGPRGPYGNPGQKGEKGNSVYVARFGKGPP
GERGDPGPPGTPGPRGARGPPGPAGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGLPLLVGPPGAQLFKGEKGQKGLPGVTGYRGPRGPKGVLGRGEKGEKGLPGF
PGLRGHPGSYGPAGFPGMKGEMGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPPLPIK
GPRGDPGFPGPAGDMGSVGPVGPAGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPA
TDELIPGRPGVPGPPGLPGQPGRQGLPGLPSVICTDRGITGEPGAKGQIGPPGRKGAKGE
KGSQGLCSCAAGPPGARGVQGPPGAQGKKGQMGYPGRHGEKGDPGSAGARGSPGLPGIPG
SAGQHGEKGEKGDPGRVRIKGLKGERGPTGVPGFPGQRGLDGRDGELGLPGEKGAEGDTG
VSLPGDKGFPGLPGPPGVKGQIGLPGLGFPGPPGARGSPGDFGDPGNVGPPGPKGQKGDT
VCITSPYPGSPGPPGFKGVQGPKGLKGLPGHPGPNGFEGQKGRRGRPGAGIPGPEGFRGT
AGDPGDQGERGSTVDGKNGPPGPPGTDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGPPCVTGLPGPPGLRGAMGLPG
PQGLPGFKGQRGDRGQAGPPGIKGLRGSPGSQGPPGPPGSRGLPGLPGNRGPAGFPGETG
SKGIQGPQGFPGLPGIQGTEGISGAKGEEGKMGPPGPGGECGDAGTKGERGPPGDSGFIN
IRLEKGQMGDPGFPGESGFRGERGEKGNTGYRGTRGLPGKNGVPGLPGDQGDTGVMGFPG
PLGFPGPKGFTGITGFQGEPGDQGEVGLPGIPGNPGLPGPKGCKGERGDPTPLLGARGRK
GPPGDPGSAGPCGFPGEKGSPGIQGQPGGPGSKGDPGYPGIPGLPGATGPQGLPGEPGER
GKRGILGPPGLQGLPGFQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYPGETG
PKGDRGEPGWPGVSIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGPPGL
DGIRGHPGNPGPPGETILVRGDSGDVGARGAPGNPGQRGQQGARGPPGNQGREGPKGPMG
VHGPQGPPGATGQPGDQGFPGRPGPRGPTGFIGDPGEPGIVDDSCPKIPGPPGEAGQRGE
DGSAGLPGPIGHPGPHGRKGEEGACGLPGQDGSPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGIPGPPGPHTRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTEPLSEQEIQPYISRCAVC
EAPAQAVAVHSQDESIPPCPANWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRRRISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttattacagctgcctggtgc
ctgctgatggtttttgcagcgcaaggaacctctgggggaggatatgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cccggtgatctgggagctcaggggccaattgggtccttgggatctgcaggacctgctggt
ctgccaggggaaaaaggactgagaggtgagaacgggcagcctggaccagctggacagaaa
ggtgataagggcccaactggagtcccaggattccctggtttagatggtgttcctggatta
ccaggaagggaaggacccagaggcaagcctggcttggatggctacaacggctcgagggga
gatccaggatttccaggagaaaatggttatatgggcccgaggggtccttatggaaatcca
gggcaaaaaggagaaaaaggaaattcagtgtacgttgcacgttttggaaaaggacctcca
ggagagagaggtgatcctggcccccctggcacgcccggacctagaggggcaagaggtcca
ccaggcccagctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacagaagggggagccgggt
gacattggacttcctgggccacctgggttaccactcttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccagaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggtgtacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggatcttatggacctgcaggttttcctggaatgaagggt
gaaatgggctttgctggttttcctgggcagcctggctatccaggcatacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttgggactcctccgcttcctattaaa
ggtccacgaggagatcctggattcccaggccctgctggtgatatggggtcagttgggcca
gtgggtcctgcaggcctgctaggaagaccaggatatgatggaacaagtctccctggcctg
ccaggggtaagtggggcaccaggacctcaaggttttcaaggtgaccctggtttgcctgca
acagatgaattaatcccaggaagacctggagttcctggaccaccaggcctaccagggcag
cctggaagacaaggcttacctggactacccagtgtgatctgtactgacagaggaatcact
ggagaacccggagcaaaaggtcagatcggccctccaggaaggaaaggtgcaaaaggagaa
aagggaagtcaaggcctctgctcgtgtgctgctggtcctcctggtgcccgtggtgtgcag
ggacctccaggtgctcaaggaaagaaaggacagatgggataccctggaagacacggagaa
aaaggtgacccaggctcagctggggcaaggggatcaccagggctccctgggatccctggt
tctgctggacagcacggtgaaaaaggagagaagggtgatccaggaagagtcaggataaaa
ggattaaaaggtgaaagaggacctactggggttccaggatttccaggccagagaggtctt
gatggcagagatggggaactaggattgcctggggaaaagggagccgagggcgacactgga
gtctctctcccaggtgataaaggattccctgggctcccaggacctcctggggtgaaagga
cagataggattgcctggtttggggtttcctggccctccaggagccagaggtagccctgga
gactttggtgatcctggtaatgttgggccacctgggccaaaaggccagaaaggtgacact
gtctgcatcacatcaccctaccctggaagtccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactccctgggcatcctggaccaaacggctttgaagggcaa
aaaggccgtcgaggcagaccaggagcaggaatccctgggccagaaggctttcgaggcaca
gctggtgatcccggtgaccagggggaaagaggatccacagttgatggtaaaaacggccct
ccaggcccacctggcacagatggtcagaaaggtcttccaggtgacaccacgtatggccct
cctggaatcccgggaaacaggggactgccaggaccccctggagcacaaggagcaaggggg
aatccaggcattcctgggcttcaaggacaacctggcaccccaggatttccaggtgccaag
ggtttcagaggcccagaaggtgatataggagcaccaggctgtccaggcttccctggtcca
ccctgtgtcacgggcttaccagggccaccaggactccgaggtgccatgggcctgccagga
cctcaaggtttaccaggctttaaaggccagaggggagacaggggccaagctgggccacct
ggaatcaaaggtctgagaggttctccaggctcacaaggtcccccaggtcctccaggctca
cgagggctcccaggactgccaggcaatagaggacctgctggtttcccaggagaaacagga
agcaaagggattcagggaccccaaggattcccaggactcccaggaatacaaggcacagag
ggaatctccggtgcaaaaggcgaagaaggaaaaatgggtccacctgggcctggtggagaa
tgtggggatgcaggaacaaaaggtgaaagggggcctccaggagacagcggcttcattaac
atccgtttagagaaagggcaaatgggagacccagggtttcctggtgagagtggattcaga
ggtgaaagaggtgaaaaaggcaatactggttacagaggcacccgaggattgccagggaag
aacggtgttccaggactgccaggtgaccaaggtgacaccggagtgatgggctttccagga
cctctgggtttcccaggaccaaaaggctttacaggaattacaggttttcaaggagaacca
ggtgaccagggtgaggttggcttaccaggaatcccaggaaatccaggactgcctgggccc
aaaggatgcaaaggtgagagaggggacccaactcctctgcttggtgcccgtggtcggaaa
gggccacccggagatccaggatcagcagggccctgtggattcccaggggagaagggttca
ccaggaatccaaggacaacctggagggccaggatccaagggtgaccctggatatccagga
ataccaggattaccaggggctacaggtcctcagggattaccaggagaacctggggaaaga
gggaaacgtggaattttgggacctccaggattgcaaggattacctggattccaaggcaga
aaaggtcttcctggacttcctggactggatggcttagatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcccccagggtacccaggagaaactgga
ccaaaaggagacagaggtgaacctggatggcctggtgtttctattccaggcccccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttctcctggtcctccaggtgatcaaggaccacctggctta
gatggcatcagaggtcatcctgggaatcctgggcctcctggagagaccatcttggtgcga
ggagattcaggtgacgtcggcgctcgaggggcaccagggaatcctggccagagaggacaa
caaggagccagaggtcctccagggaaccaaggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgctacaggacaaccaggagaccaaggttttcca
ggaagacccggtcccagaggtcccacaggtttcataggtgaccctggggagccaggaata
gttgatgattcgtgccctaaaatcccaggcccccctggggaagcagggcagagaggagag
gacggctctgcaggattaccagggccaataggccaccctggaccccacggaagaaaaggt
gaagaaggggcatgtggcctgccaggtcaagatggctcaccaggggcacctgggccacca
ggtgaccaagggagcagaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtatcccaggaccaccaggcccccacacgagatctgcaagtggattcttgctcgtc
cttcacagccagtcagacagagaaccgctctgcccacaggggatgccaaaattgtggact
ggctacagtttgctgtacctggaaggacaggaaaaggcccataatcaagatcttggtctg
gcaggctcttgtctccccgtgtttagcaccatgccctttgcctactgcaacatcaaccag
gtgtgttactacgccagccggaacgacaagtcctactggttgtccagcgccgcccccctg
cccacggagccgctctccgagcaggaaatccagccctacatcagcaggtgtgctgtgtgc
gaggccccagcccaggcagtggcagttcacagtcaagatgagtccatccctccctgccca
gcgaactggaggagcctttggatcgggtattcctttctgatgcacactggctctggtgat
cagggtggtggacagtcccttatgtcacctggaagctgcctggaggacttcagatcagca
ccattcatcgagtgccagggccagcgggggacgtgtcagttctttgccaatgaatacagc
ttctggctgacaactgtgatgcctgaactgcagtttgcatcagcccccctgtcaggaact
ctgaaagaaggacaagagcagaggaggagaatcagcaggtgccaggtgtgcctgaagcac
ggctaa
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integrated database retrieval system
