Empidonax traillii (willow flycatcher): 114069544
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Entry
114069544 CDS
T05887
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114069544 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114069544 (EDC4)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114069544 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
114069544 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_CDC20-Fz
WDR55
RnlA-toxin_DBD
Cap4_nuclease
Motif
Other DBs
NCBI-GeneID:
114069544
NCBI-ProteinID:
XP_027762216
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPAGSVNENQRPSNSYNGDLNGLLVSESLGSGDGSSL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWHLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDNEESEEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSIPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSVEGSPGTGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSAPMPSHGSH
EEFAFPDHMADLSTEGLGSEKESVHGSQPDLRRIADLPVPADFLALANDAKPKLMTPDAF
MTPSTSLQQITVSPGSSASSLTAVTAMSSTSVTDASLPSRPSEDLAVSPKMQLDTSLTLS
SSSSSLQTSPRSHSVLIPGLPDKLAPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRER
SPDVISSASTAMSQDIPEIASETLQRSFAAAPPGLPGEVLEPAHHADSMASAASALHLLS
PRNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETR
NSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKA
SAQRLPVKDWKVKASPRASPKLKRKGKKDDGDVNQSPRSSNNQVTAEFQDELMCILRSQQ
RELSDLRQNQMELLQRLTDHLDAIQSSLMGHMERVVDSQQEQEQRRLDRVLTEGQQRNGQ
LQEHLSQQLSQSLSTAVCNRLERTIRDEMKKSVPQCISKSMDPTVSQLSNTVAAKLTAVE
GTLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIN
DTFKQGTQEYIQQLETHLKNKKVREQEVRDPLLNQLRQLLSTFQSSTEQLASTVAASVHA
EVQHQLHIMVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTH
LDFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVL
LSLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFVQVEPH
NPLNKSARRLMIMLQGLVTPSMT
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggccggcaggttcggtgaatgagaaccagagaccgtcgaattcgtacaac
ggagacctgaatggactgctggtgtctgaatccctcgggagcggagatggatcttccctg
gccaagccagtgcatcgcagcatctccctaggagccctgcaggagaaacaagtcatctgc
ctttctggtgatgacagctccacttgcttggtgatatcagcaaaagacgtagagatagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaaatactattatggcaatctgatagcggtttca
aactcttacttggcttatgcaattagagctgccagcaatggctcggccatggtgcgggtg
ctgagcgtcagcaccgccgagcggaccctgctgaagggcttcaccggcggcgtggcagac
ctggcctttgcccacctcaactccaaccagctggcgtgcctggacgaggctggcaacctc
tttgtctggcacctggccatggataaagaaaaaatccaagaggagatcttggtgaacatc
aagcggcctgacaacaccccactgaacaccttccgaagaatcatctggtgccctttcatc
ccggatgataacgaggagagcgaggaggagggaagtcagacgttggcgctgttacatgag
gacagggcagaggtgtgggatttggacatcatccggacgaacaacagctcctggccggtg
gaagtgcctgatatcaaagaaggcttcatcgtggtgaagggccacagcacgtgcttgagc
gagggagcactttcaccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgagggacaagacgagccaaggtgtcttcatgagtggaaa
ccccatgatggcagacctctttcctgcctgctcttttgtgacaaccataaaaagcaggac
ccagaggttcccttctggaggtttctcatcacgggagctgatcagaacagagaactgaag
atgtggtgcactgtgtcctggacctgcctgcagactgtccgcttttctcctgacatcttc
agctccatgagtattcctcccagcctgaaagtctgtctggacctctcggctgaatatctg
atactgagcgatgtgcagaggaaagtcttgtacgtgatggagctgatgcagaaccaagag
gagggcaaggcttacttcagctccatctcagagttcctcctcacccacccagtcctgagc
tttggcatccaggccgtgagccgctgtcggttgaggcacacggaggtgctcccagccgag
gaggagaacgacaacttgagtgtggaaggttctccgggcactggggctgttgaatcagca
gcaggcgtgctgatcaaactcttctgcgtgcacaccaaggccctgcaggacgtgcagatt
agattccagcctcttcatagccctgacacgagtgcccccatgccttcccatggctctcat
gaagaatttgccttcccagaccatatggctgatctgagcacggaagggctgggatctgag
aaggaatcagtgcatggctctcaaccagacctgcggcggattgctgacctgcctgtgccc
gcagacttcctggccctcgcaaacgatgccaagcccaagctgatgactccagatgcattc
atgacaccgagtacttctcttcagcagatcactgtctctccaggcagcagtgccagctcc
ctgactgcagtcacagccatgagtagcacttctgtcacggatgcctctctgcccagcaga
ccatcagaagacttggctgtgagccccaagatgcagctggacaccagcctcacgctgagc
agcagtagcagcagtctccagaccagtcctaggagtcattcagttcttatcccaggcctc
cctgacaagctagcaccaaaggcacctgttccagtcgctccagggaactcctctctagcg
ctggagttgcaggaagtggagcccttggtggtgccccaggcatctcccacccgcgagcgc
tctccggacgtcatttcctccgcttccacagccatgtcccaggacatcccggagatcgct
tccgagaccctgcagcgcagcttcgccgccgccccgccggggctgcccggggaggtgctg
gagcccgctcaccacgcggacagcatggcctctgccgcctcagccttgcatctgctgtcc
cccaggaacaggcacaactccgagcacagccaccactctttggacatgcctccagtggag
gtggacagactgaacgctccgtcgttgctggagacggctttaactcaggaaaacgcgtct
tcggacagtgttgtgagccagccatggccagcagctcctgacataaccagagaaaccagg
aacagcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctac
caccgacacagctaccacctgctgcagcatgacagccaggatgccagtgcagaacaaagc
gaccacgacgatgaagttgcgagcttggcttctacgtcgggtggatttggtgccaaagca
tctgcgcagaggctgcctgtgaaggactggaaagtcaaggcatccccccgggcttcccca
aagctaaagcggaagggcaagaaagatgacggggatgtgaaccagtcaccgagatcttct
aacaaccaggtgacagcagagttccaggacgagctgatgtgcattctgaggagccagcag
cgggagctctccgacctgcggcagaaccagatggagctgctgcagagactcacggaccac
ctggacgccattcagagctccctcatgggccacatggagagggtggttgactcccagcag
gagcaggagcagaggaggctggaccgagtgctgacggaggggcagcagcgcaacgggcag
ctccaggagcacctgtcccagcagctctcccagtccctgtccacagccgtgtgcaaccgt
ctggagaggaccattcgtgacgagatgaagaagagtgtgccccagtgcatttccaagagc
atggaccccactgttagccagctgagtaacactgttgctgccaagctcactgctgttgag
gggacactaaaagagaatatcaccaagctggtgaaatcaaagaaccttacagacagtgtt
gtgagggcgacggccgacaccctgcaggggccgatccagtcggcgtacagggaagcattc
cagagcgttgtgctgccggccttcgagaagagctgccagtccatgttccagcaaatcaat
gacaccttcaagcagggcacacaggaatatatccagcagctcgagactcacttgaagaac
aagaaggtacgagagcaggaggtgcgggacccgctgctgaatcagcttcggcagctcctc
agcaccttccagagcagcacggagcagctggcgtccaccgtggcggccagcgtgcacgcc
gaggtgcagcaccagctgcacatcatggtgggcaacatgcaggagtctatcctggcccag
gtgcagagggtcattaaaggagaagtgagcctggctatgaaggagcagcaggcagctgtc
acctccagcattgtccaggcgatgcgctcggcagccgggacgcccatcccctcgactcac
ttggatttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaac
caagctttccagcaggctctgacagcagctgatctcaacctggttctgtatgtctgtgag
actgtggatactcagcaagtatttgggcagcatccgtgccctctgtcccagcctgtgctg
ctctccctcatccagcagctctcctcggatttgggcactcgcacagagctgaagttgaat
tacttggaggacgcagtgatgcacctggaccaaagtgaccccatcacccgagaccacatg
gggtcagtcatgaaccaggtgcggcagaagctcttccagttcgtccaggtggaacctcac
aaccctctgaacaagtctgcacgtcgcctcatgatcatgctccagggcctggtcaccccc
agcatgacctag
DBGET
integrated database retrieval system
