Empidonax traillii (willow flycatcher): 114069640
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Entry
114069640 CDS
T05887
Name
(RefSeq) protocadherin alpha-C1-like isoform X1
KO
K16493
protocadherin alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
114069640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etl03036
]
114069640
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
etl04515
]
114069640
Chromosome and associated proteins [BR:
etl03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
114069640
Cell adhesion molecules [BR:
etl04515
]
Cadherins
Protocadherins
114069640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_FAT4_N
Cadherin_C_2
Ig_Cad99C_N
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
114069640
NCBI-ProteinID:
XP_027762381
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MRGYLMVFCLICCTADGQIVYSIAEETERGASVGNIAKDLGIDAATLSARKFRMITGSSK
QYFNINASTGALSVNEPIDREQLCELKSVCLLNYELVLENPLELYRMEFKVLDINDNSPS
FPLSEYHINVPEFLSPGARFTLPNAQDLDEGANSVQNYTLSPDEHFLLEMQIRGDGSKYP
ELVLKKALDREQQATHRLVLTAKDGGNPPKSGDVPVIVTVLDTNDNAPEFEHSVYRASIL
ENSPSGTLVVQVHATDLDEGPNGEIRYSFSNTTSADLQRMFLIHPHTGEVTVNGVLAVQR
PLLEMLIEARDNGAFGMSSTAKLLVEITDVNNHGPEITITSLSSPIPEDAIPGTVIALLS
ILDKDPGENGKVTCQIPDNLPFQLKPSLQNYYSLVTSEGLDRELISEYNITITATDLGSP
PITTQKTVWVQISDVNDNPPVFSADTFDVFVEENNPLGAFIYQVSASDPDIGENGRVSYM
LRNSTVAGSALTSFLSVNLANGSIYAKRAFDFEQLRSFYFQVEAKDNGSPALSAAITVNV
YISDQNDNAPAILYPTSQNGSIAVEVVPRLADEDYLVTKVVADDEDDAQNAWLSYHLAHA
SDSTLFQLSPHTGELRTTRSMRSTDFLKHKVVVVVRDHGDPPLSSTVTVGILLADTLPQA
LPDFDDSGEPPPLLNATNIYLIISLACVSFVFAAFLLFLAAVRLCRCRTCCCGCCCPADD
YKKYCYSVHMLPGSHLPPDMLEVTGVGKLTHTYLYTASVGLGPGNSSVPNGDAGNVPSGS
RLQVPGPCIQVQQVQSDRLSAVLVPKHPNPDWRYSASLRAGMQSAVHMEEAAVLRGGPGG
PDQQWPTVSSATGEPEAGEVSPPVGAGVNSNSWTFKFGPGNSKQGGPESKKQTQVSFLLR
RKGESSQYSQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgcggggctatttaatggtgttctgccttatttgctgcaccgcggacgggcaaatagtg
tattccatcgccgaggaaacagagcgtggagcatctgttgggaacatagcgaaggattta
ggaatagatgcagctacactttcagctcggaaatttcgcatgatcaccggttcaagtaag
caatattttaatataaatgccagcacgggggctttgtctgttaacgagcccatagacaga
gagcagctttgtgaattaaagtctgtctgtctcctgaattatgaactcgtgttagaaaac
cctctggagctttataggatggaatttaaagtcctggacataaacgacaactcccccagc
tttcccttaagtgaatatcatataaacgtgcctgagttcctgtcacctggggcacggttt
acactccccaatgcccaagatcttgatgaaggtgctaacagtgtccagaattatactctg
agccccgatgaacatttccttttggaaatgcagatacgcggggatgggagtaaataccct
gaactggtgctgaagaaagccttagacagggagcagcaagccactcacagacttgtgctt
acagccaaagatggtgggaatcctccaaagtccggtgatgtcccggtaattgtgactgtg
ctggataccaatgacaatgcaccagaattcgagcactcggtctacagggcaagtatcttg
gagaactcccccagtggcactctggtagtccaagtgcatgccacggacttggatgaaggt
ccaaatggagagatcaggtattcatttagcaatacgacttctgctgacttacagcgcatg
ttcttaattcacccgcacaccggggaggtgacagtcaatggcgttttagctgttcagaga
ccccttctcgagatgcttattgaggcaagggataatggggcatttggcatgtccagcaca
gctaagctgctggtggaaatcactgatgtgaacaatcacggcccagagattacaattaca
tccctttccagtcccattcctgaggatgctattcctggcacagtcatagctctgctgagt
attttggataaggaccctggggagaatgggaaagtaacctgccagatccctgacaacctt
cccttccagttaaagccttcccttcaaaactactacagccttgtcaccagtgagggtctg
gatcgagaactgatcagtgagtacaacatcaccattactgccacagacttgggttctcca
cccatcaccactcagaagaccgtttgggtgcagatttctgacgtgaatgataaccctcct
gtcttcagtgctgacacatttgatgtgtttgtggaggagaacaatccacttggtgctttt
atctaccaggtctcggcatctgaccctgatataggggagaatggacgggtttcttacatg
ctcaggaattccacagttgcaggcagtgccctgaccagctttctgtctgtgaacttggcc
aatgggagcatctatgcaaaacgtgcctttgactttgagcagcttaggagcttctatttc
caagtggaagccaaggacaacgggtcaccagccttgagtgctgccataacagtgaatgtt
tacatctcagaccagaatgacaatgccccagccatcctgtaccccaccagccagaacggc
tccatagctgtggaggtcgtgccccgcctggctgacgaggactacctggtgaccaaagtg
gtggcagacgatgaggacgacgcgcagaacgcctggctttcctatcacctggcccacgcc
tctgactccaccctgttccagctgtccccgcacacgggtgagctgcgcaccacgcgctcc
atgcgctccaccgacttcctcaagcacaaggtggtcgtggtggtgcgggaccacggggac
ccaccgctctcctccacggtgaccgtgggcatcctgctggctgacaccctgccccaggcg
ctgccggacttcgacgacagcggggagcccccgccgctgctcaacgctaccaacatctac
ttgatcatttcccttgcctgcgtctcgttcgtcttcgcagcgttcctcctcttcctcgcc
gccgtgcggctctgccgctgccggacttgctgctgcggctgctgctgcccagctgatgat
tataaaaaatattgctacagtgtgcacatgcttcccggctcgcacctccccccggacatg
ctggaggtcactggtgtgggtaaactgactcacacctacttgtacacggcatctgtaggt
cttgggcccggtaacagcagcgtcccaaatggtgatgctgggaatgttcccagtggctca
aggttacaggtgccagggccctgcatccaagtgcagcaggtccaaagtgaccggttgagt
gctgtcctcgtgccaaaacaccccaacccggactggcgctattctgcatctctgagggca
ggaatgcaaagtgctgtccatatggaggaggcagcagtcctgcgtggtggaccaggaggg
cctgatcagcagtggccaacagtctccagtgctacaggagaacctgaggcgggagaggtg
tcccccccagtgggagctggtgtgaacagcaacagctggacctttaaatttggaccgggc
aattccaaacaaggtggtcctgaatctaaaaagcagacacaagtttcctttctcctacgc
cgaaaaggagaatcttcacagtacagccagtga
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