Empidonax traillii (willow flycatcher): 114069676
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Entry
114069676 CDS
T05887
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etl03041
]
114069676
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114069676
Spliceosome [BR:
etl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114069676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
AAA_19
HA2_N
Ank_2
nSTAND3
ATPase
Ank
Ank_4
PhoH
AAA_23
AAA_22
AAA_7
UvrD-helicase
AAA_29
Motif
Other DBs
NCBI-GeneID:
114069676
NCBI-ProteinID:
XP_027762473
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRPRHVPPRQPGRGAGGSGSAAAAPRVRGGKGLRDVRVDEEVEIAVNLALERFRYGEDT
EMEFPSSFTSTERAFVHRLCQSLGLISKSKGKGANRYLTVRKKHGLELKHTVMTCALTPV
TKLAVCTLIRNFPVTNKERTELLPKMERGNACAVESENREVIKTSGRLNDGVPQVPVKRG
ESEFDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFILDDCCKTGTPCR
IFCTQPRRLAALAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNGILLRTLMA
GDSTLSNVTHVIVDEVHERDRFSDFLLIKLRDVLQTQTNLKLIISSAALDANLFIRYFGC
CPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMIKYKKEKQREEKQQSSLTEWCSAQENNS
ELEPQRQKSVPRATEEYNLLGDGGDTVFNQLTEKDVNCLEPWLIKEMDSCLSDIWLHKDI
DSFAQVFHLILTENLSVDYRHSETSATPLMIAAGRGFLNQVEQLISMGASIHCRSSNGWM
AVDWAKHFGQTEVVDLLESYSASAGFGNLDESSLVRTSGNDLSAEDRELLTAYHHSSDDE
KVDLDLIMHLLYNICQSSEAGAILIFLPGYDEIVSLRDRILYDDRRFADNAHRYQVFMLH
SNMQTLDQKKVLKSPPSGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTM
LKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKL
LAPINCSIVDFLTKAPDPPPALIVRNALQMLKAIDAMDPWEDLTELGYHLTELPVEPHLG
KMVLCAVALKCLDPVLTIACALAYRDPFVLPALASQKRAAMLCRKRFTAGTFSDHMVLLR
AFQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRTRGGADIRDVN
TNSENWAVVKAALVAGMYPNLVHVDRESLVLTGPKEKKVRFHPTSVLSQTQYKKIPPANG
QTAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGPARLPSNALQTSSSFRG
DGVSNESSDSEMEDKTTANLSLLKLDEWLHLRLDPEAADLLLQLRQKWHSLFLRRMRAPS
KLWSQADETTVRTIVAVLTAEEQSAGLQQPSGIGQRPRTVASEELPLASTWRSANNRKSS
AETEFSDSSNAEKVLMKSTPPALHQAKKYKRKNILHSKQTSDDRSDRSSVKSADSSSYPS
PCASPCSPISGKCSTSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGA
FWESSTVYLIFSVQGSGHFQGFARMSSAIGCEKSQDWGSAGFGGVFKVEWIRKESIPFQF
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDHIPLAGKRSTD
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggccccggcacgtcccgcccaggcagcccggcaggggcgccgggggctcgggc
agcgctgccgcggcgccccgcgtccggggcggcaaaggtctcagggatgtccgcgtggac
gaggaggtggagatcgcggtgaacctcgccctggagcggttccgctacggcgaggacaca
gaaatggagtttccctcttctttcactagtactgaaagagcatttgttcaccggctctgt
cagtctcttggactgatatctaaaagtaaaggaaaaggggcgaatcgatacctaactgta
aggaaaaagcatggattagaactaaaacatacagtaatgacttgtgccttaactcctgtt
acaaaacttgctgtttgtactttaattcgaaattttcctgtcacgaataaagaaagaaca
gaacttctgccgaagatggagcgaggaaatgcatgtgctgttgaatctgaaaacagagaa
gtgattaagacaagtggacgacttaatgatggtgtaccccaggttccagtgaaaagagga
gaatcagagtttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaatt
gtcaaaataataaaggacaataaagttgttttgattgtaggagaaacgggatcaggaaaa
actactcaaatccctcagtttattcttgacgactgttgcaaaactggaactccctgtcgt
atattttgcactcaaccaagacgtttggcagcacttgctgtggctgaaagagtggcagca
gaaagaagagaaaagattggccagactattggttatcagatacgattagaaagcagggtt
tctccaaagacactggtaacattttgcactaatggcatcctgcttcgcacgctcatggca
ggagacagcaccctatctaatgtgacacatgttattgtggatgaagtacatgagagggat
aggttcagtgacttcttgttaataaaactgagagatgtgttgcaaacccagactaatcta
aaactcattatttctagtgctgctctagatgcaaatctctttattaggtattttggatgt
tgcccagtaatacacatccaaggaagaccttttgaagtgaaagagatgtttttggaggac
attttacgaagtactgggtatacaaataaagagatgataaagtacaaaaaagagaaacag
cgagaagagaagcagcaaagctctcttactgaatggtgttctgctcaagaaaataatagc
gaactggaacctcagagacaaaaatctgtcccgagggcaactgaagagtataatctgttg
ggtgatggtggtgacacagtatttaatcaactgaccgaaaaagatgtgaattgccttgaa
ccgtggctaataaaagaaatggattcttgtctttctgacatctggttacataaagatatt
gattcctttgctcaggtgttccacctcattttaacggaaaatcttagtgttgattataga
cacagcgaaaccagtgcaactccactaatgattgctgcagggagaggctttttgaatcaa
gtagaacaactgatcagtatgggagcaagtatccactgcagatcatccaatggctggatg
gctgtggactgggctaagcactttggacagacagaggttgttgatctcttggaatcctac
agtgcttcagcaggatttggaaatttggatgaaagttccctggtccgaacaagtggtaat
gaccttagtgcagaggacagagagctattgacagcttatcatcacagttctgatgatgaa
aaagtggatctggacctgattatgcacttactttataacatctgtcaaagttctgaggct
ggcgcaattttaatatttctccctggatacgatgagatagtgagcctgagggaccgtatt
ctttatgatgacaggagatttgctgataatgctcacaggtaccaggttttcatgcttcat
tcaaatatgcagactttggatcagaagaaagtgcttaaaagtccaccttctggtgtccgc
aaaataattctttcgacaaatattgcagaaaccagcataacagtcaatgatgttgtattt
gttattgactcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatg
ctaaaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctggtcgc
tgtcagcctggggtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaa
tttcagactccagaacttctaagaatgccacttcaggagctttgtttacacacaaaactt
ctggctccaattaattgttcaattgttgactttcttacgaaagctcctgatcctccacca
gctttaattgtgagaaatgctctccaaatgctcaaggctatagatgccatggacccttgg
gaagatctcactgaacttggttatcatctcactgaactgccagtagagccacaccttggc
aaaatggtgctgtgtgccgtagctttgaagtgcctggatcctgttctcaccattgcttgt
gctcttgcctaccgagacccatttgtccttcctgcactggcctcccaaaagcgtgcagcc
atgctctgcaggaagcgttttactgcaggaacctttagtgaccatatggtgcttctcagg
gctttccaggcatggcagaaagcacgcagtgatggttgggagagagctttctgtgagaag
aacttcttgtctcaagccacaatggaaatcattgtaggaatgagaacacaattgcttggc
caacttagggcctcaggttttgttagaactagaggaggagctgatattagagatgttaat
actaactctgaaaactgggctgtagttaaagctgccctagtggctgggatgtatcccaat
ctggtgcatgtagacagagaaagcctagttttgactggaccaaaggagaagaaagtgcga
tttcatcctacctctgtgcttagtcaaactcaatataaaaagattcccccagcaaatggc
caaactgcagctgttcaggcactccctacagactggcttatatatgacgaaatgacgaga
gctcacaggatagcgaacatcaggtgctgctctgttgtgacacctgtcactgtggcactc
ttctgtggaccagctagattaccaagtaatgctttgcagacatcttcatcctttcgaggg
gatggggtatctaatgagagtagcgacagtgagatggaggacaaaacaactgctaattta
tcactactgaagttagatgaatggctccatctcagactggaccctgaagccgctgatttg
ctgttgcaacttagacagaagtggcatagcctatttctgcgtcgtatgagagctccttca
aagttgtggtctcaagctgatgaaacaactgtaagaacaattgtagctgttttaactgct
gaagaacagtctgcaggtttgcagcagccttcgggaattggtcagagaccaagaactgtg
gcttcagaagaacttcctttagcatctacatggaggtcagccaacaacagaaaaagttca
gcagaaactgaattctctgactcctctaatgctgaaaaagttttaatgaaatctacacct
cctgcacttcaccaggcaaagaagtacaaacgaaaaaatattttgcactccaaacaaact
tccgatgacaggtcagatcgatcatcagtgaagtctgcagacagcagtagctatcctagc
ccctgtgctagtccttgttctccaatatctggaaagtgttccacatctccttcaccaaga
caaaatatgccagttcggtactttataatgaaaagtagcaacttgcagaacattgatatt
tctcagcagaagggtatatggtccactacgccaagtaatgagcgaaaactgaatggagcc
ttttgggagagcagcacagtttacttaatattttctgttcaagggtctggacactttcag
ggttttgctagaatgagttcagcaatagggtgtgagaaaagtcaagactggggatctgct
ggttttggaggtgtatttaaggtggagtggatccgaaaagaaagcattccttttcagttt
gcacaccatttactcaacccttggaatgacaataagaaagtacaaataagcagagatggc
caggagctggaaccacaagttggagagcagttgctgcagctttgggaccatattcctttg
gcaggaaaaagatcaactgattaa
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integrated database retrieval system
