Empidonax traillii (willow flycatcher): 114071350
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Entry
114071350 CDS
T05887
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03013
Nucleocytoplasmic transport
etl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114071350 (UPF1)
03015 mRNA surveillance pathway
114071350 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114071350 (UPF1)
Enzymes [BR:
etl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114071350 (UPF1)
5.6.2.5 RNA 5'-3' helicase
114071350 (UPF1)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114071350 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
114071350 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114071350
NCBI-ProteinID:
XP_027764968
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MSCGPTESPAGQGPQGPVEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYT
KDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGP
LGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQD
RCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLR
YEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMR
LMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVW
KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ
VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH
QTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRY
RALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK
QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI
FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEK
ITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD
FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQ
KVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRP
SNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKT
GRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQP
ELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgtggacccacggaatcaccggcggggcagggcccgcaggggccggtggaagcc
caggtgaatgggcctgatgggatcctgcagaacggagctgtggatgagaacgtggccaag
accagccagctcctggcagagctcaacttcgaggaggatgaggaagacacctactacacc
aaggacctccctgtgcacgcctgcagttactgtgggatccacgaccctgcctgcgtggtt
tactgcaacaccagcaagaagtggttctgtaacgggcgtggcaacacatcgggcagccac
attgtgaaccacctggtgagagccaagtgcaaagaggtgactctgcacaaggatgggccc
ctgggggagaccgtcctggagtgctacaactgcggatgccgcaacgtcttcctgctcggc
ttcatcccagccaaggcagactccgtggtggttctgctgtgcaggcagccgtgtgccagc
cagagcagcctgaaggacatcaactgggacagctcccagtggcagcccctcatccaggac
cgctgcttcctgtcgtggctggtgaagatcccgtcggagcaggagcagctcagggcccgg
cagatcacggcccagcagatcaacaagctggaggagctctggaaggaaaatccatctgcc
accctggaggacctggaaaagcctggtgtcgatgaggaaccgcagcatgtcctgcttaga
tacgaagatgcttatcaataccaaaatatatttggtcctctggtcaagcttgaggcagat
tatgacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctg
ggcttgaacaagaagagaattgcttacttcactttgccaaagactgactcagacatgagg
ctcatgcaaggagatgagatctgcctgaggtacaaaggagacctggccccgctgtggaaa
ggaattggtcatgttatcaaagttcctgataattatggtgatgagattgccatcgagctg
aggagcagcgtgggagcccctgtggaagttactcacaacttccaagtggattttgtgtgg
aaatctacttcctttgacagaatgcagagtgccctcaaaacgttcgctgtggacgagacc
tcggtgtctgggtacatctaccacaagctgctgggccacgaggtggaggatgtgattatt
aaatgccagttgccaaagcgcttcacagcacaaggacttcctgatctcaaccactctcag
gtttatgccgtgaaaacagtcctgcagcgtcctctgagccttattcagggtccccctggc
actgggaaaacagtgacatcagccaccatcgtgtatcatctggccagacagggcaatggg
cctgtgctggtgtgtgctcccagcaacatcgccgtggaccagctcaccgagaagatccac
cagaccgggctcaaggtggttcgtctgtgtgccaagagccgtgaggcaatcgactccccc
gtgtccttcctggcactgcacaaccagatcaggaacatggacagcatgccagagcttcag
aaactgcagcagctcaaagatgaaactggagagctctcatctgctgatgagaaacgttac
cgggcgctgaagcgaaccgcggagcgggagctgctcatgaacgccgatgtgatctgctgc
acctgcgtgggcgccggggatcccaggctggccaagatgcagttccgctccatcctgatc
gatgagagcacccaggccaccgagcccgagtgcatggtgcccgttgtgctgggagcaaag
cagcttatcctggtgggtgaccactgccagctggggcctgtggtgatgtgcaagaaggct
gccaaggctgggctgtcccagtccctgtttgagaggctggtggtgctggggatccggccc
atccggctgcaggtgcagtaccggatgcatcccgccctcagcgccttcccttccaacatc
ttctacgagggctctctccagaacggggtcactgcagccgaccgtgtgaagaaaggcttc
gatttccagtggccacagcctgacaagcccatgttcttctacgtcacccagggccaggag
gagattgccagctcgggcacctcttacctgaacaggaccgaagctgccaacgtggagaaa
atcaccacgaagctgctgaaggctggggccaaaccagaccagattggcatcatcactcct
tacgaggggcagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacaca
aagctctaccaggaagtggaaattgcgagtgtggatgccttccagggccgggagaaggac
ttcattatcctttcctgtgtgagggccaacgagcaccagggaattgggttcctcaatgac
cccaggaggctcaacgtggcccttaccagagccaggtatggagtaatcattgttgggaac
cccaaagccctgtccaagcagccactctggaatcacctcctgaattactacaaggagcag
aaggtgctggtggagggaccactgaacaacctccgggagagcctcatgcagttcagcaaa
ccccggaaactcgtcaacaccatcaaccccggtgcccgtttcatgaccactgccatgtat
gatgcacgtgaggccattattccaggatctgtgtatgacaggagcagtcaagggcgccca
tccaacatgtacttccaaacccacgaccagatcgggatgatcagcgctggccccagccac
gtcaccgccatgaacattcccatccccttcaacctggtgatgcccccgatgccgcccccg
ggctacttcggccaggccaacggccccgctgcagggcgcggggctcccaaaggaaagacg
gggcgcggcgggcgccagaaaaaccgctttgggatccctgggacgagccagtccaacctt
cccaacagtcaagccagccaagacgtggtgtcccagcctttctcccagggccccctgact
cagggctatatctccatgagtcagccttcacagatgagtcagcctgggctctcccaaccg
gagttatcacaggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctg
tcacaggactcaacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactg
tcacagtattag
DBGET
integrated database retrieval system
