Empidonax traillii (willow flycatcher): 114071401
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Entry
114071401 CDS
T05887
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03013
Nucleocytoplasmic transport
etl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114071401 (UPF2)
03015 mRNA surveillance pathway
114071401 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114071401 (UPF2)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114071401 (UPF2)
mRNA cycle factors
P-body specific factors
114071401 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
114071401
NCBI-ProteinID:
XP_027765030
LinkDB
All DBs
Position
Unknown
AA seq
1249 aa
AA seq
DB search
MPAERKKPTNMEEKESQLNNKEFSERRPVSTRDKPKEDVKVGMKRETLKVPEDKKKKMEE
DKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEAAAQLKE
KEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTITE
QQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQA
WKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESHT
HVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTSL
TKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDEN
MPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILF
KDNEKYSQNKDPSKDESRDSKDAKDNKEAAGSEDLELELENLDINDDPLELDCGDEAEDL
TKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRRK
LVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETK
NKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLR
TSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDL
SKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGI
HVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNP
DGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDVWT
KEHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKDSI
TEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTDSN
KENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIP
LHLKSQLKKGPPLAGGEGEAESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQ
AEQEERMRMKKLTLDINERQEQEDYQGKQIREDLIFIFRAALMDVQKMS
NT seq
3748 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaaaccaacaaatatggaagaaaaggaatctcagctaaataat
aaagaattcagtgaaaggagaccagtgagcaccagggacaagccaaaagaagatgtcaag
gttggcatgaagagagagactttaaaggttcctgaagataaaaagaagaaaatggaagag
gataaaagaaagaaggaagacaaggagaggaagaaaaaagaagaggataaagtaaaggca
gaagaggagcaaaagaagaaagaagaagaagagaaaaagaaacttgaagaagaggagaaa
aagaaacaagaggaggaagagaaaaagaaacaagaagaagcagctgctcagctgaaggaa
aaagaggaagcacatcagctccaccaggaggcttgggagcgccaccaggcaaggaaagag
ctccgcagcaagaaccagaacgccccggacaaccggcccgaggaaaacttcttcagcagg
ctggactccagcctgaagaaaaacacagcctttgttaagaagctgaaaaccatcacagag
cagcaacgggactccctgtcccacgactttaacagcctgaatttaagcaagtacattgca
gaagcagtggcttccatcgtggaggccaagctgaagatctcggacgtgaactgcgccgtg
cacttgtgctccctgttccaccagcgctacgctgatttcgccccgtccttgctgcaggcc
tggaaaaaacactttgaggcgaggaaagaagagaagactcccaacatcaccaagttaagg
actgacctgcgtttcatcgcggagctgacgatagttgggattttcaccgacaaggaaggg
ctgtctttgatctacgagcagcttaaaaacattattaacgccgaccgggagtcccacacg
cacgtgtcggtggtgatcagcttctgccgccactgcggggatgacatcgctggtttggtg
cccaggaaagtgaaaactgttgcagagaagtttaatctgagctttcctcccagtgagata
atcagcccagagaaacagcagcccttccagaatttgctgaaggaatactttacgtctttg
accaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaacaggcgc
atcctgcactccaagggggagctgagcgaggatcgccacaagcaatatgaggagtttgca
atgtcctatcagaagctgttggcaaattctcagtccctggctgatctcctggatgaaaac
atgcctgatcttccccaggagaaaccaacacccgaggaacatggacctggtattgatatt
ttcaccccaggaaagcctggagaatatgacctggagggggggatctgggaagatgaagat
gccagaaacttctatgagaatctcatcgacttgaaggcttttgtgccagcaattttgttt
aaagataatgaaaaatattcccagaacaaggatcccagcaaagatgaatcaagagattca
aaagatgccaaagataataaggaagcagctgggagcgaggatctggagttggagctggag
aacctggatattaatgatgatccattggagttggactgtggagatgaggcagaagatctt
acaaagaagcttcttgatgagcaagaacaagaggatgaagaagccagtactggatctcat
ttaaaactgatagtagatgcttttcttcagcagcttccaaactgtgtcaacagagacctc
atagacaaggcagccatggatttttgcatgaatatgaacacaaaagccaacagaagaaaa
ctggtacgagcacttttcatagttcccagacaaaggttggatttgctcccattttatgcc
agactggttgccacgttgcacccctgtatgtctgatgtggcggaggatctctgttccatg
ctgaaaggggatttcagattccatgtaagaaagaaggaccagatcaacattgaaacaaag
aacaaaactgtgaggtttattggggagctcaccaagtttaagatgttctccaaaaatgac
accctgcactgtttgaagatgctgctgtcagacttctctcatcaccacattgagatggcc
tgtaccctgctggaaacctgtggcagattcctcttcagatccccagagtctcacctaaga
accagcgtccttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgatgcccgc
tatgtcacgatggtggaaaatgcctattactactgtaatccccctccagctgaaaaaact
gtgaagaaaaaacgccctcccttgcaggaatatatcaggaaacttctgtacaaggatctc
tccaaggtcaccacagaaaaggtcctgaggcagatgcgcaagctcccttggcaggatgca
gaagttaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatataatagt
attcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtcggaatt
catgttgtggatggagtgctggaggatattcgactgggaatggaggttaatcaaccaaag
tttaaccagcggcggatcagcagtgccaagttcttgggggagctctacaattaccggatg
gtggaatctgccgtcatatttcgaactctctattctttcacctcctttggggtgaaccct
gatggcagccccagccccctggaccctccagagcatctcttcaggatcaggctggtgtgc
accatcctcgatacctgcgggcagtacttcgacagagggtccagcaaacgaaagctcgat
tgcttccttgtgtacttccagcgctacgtgtggtggaaaaaaagcctggatgtttggaca
aaagagcaccctttccctatagacatagattatatgatcagtgataccctggagctgctg
agaccaaagatcaagctgtgcaattctctggaagaagctgtgagacaggtgcaggacttg
gaacgagagttcttaataaaactaggaattgtgaatgacaaagattccaaagattccatt
acggaaggagagaacctggaagaggacgaagaggaggaggaaggtggagcagagacagag
gaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctctgacaat
gaggaagaagaaggggaggaggaagaggaggaaaacacggattatcttacagactccaat
aaggaaaacgagactgatgaggagaacacggaagtgatgattaaaggaggaggattgaag
catgtcccttgtgcagaggatgaggatttcattcaggcattggataaaatgatgctggaa
aaccttcagcaacgcagtggggagtcagtgaaagtgcatcagctggatgttgccatccct
ctgcacctcaagagccagctcaagaaggggcccccactcgcgggtggagaaggagaggcc
gagtctggggacacgatgccctttgtcatgttaacaaggaaaggcaacaaacagcagttc
aagatcctaaatgtgcccatgtcttcccaactggcggcaaaccattggaaccagcagcag
gcggaacaggaggagaggatgaggatgaaaaagctcactctggatatcaatgaacggcag
gaacaggaggactaccagggtaagcaaatcagagaggatttaattttcattttcagggca
gccctcatggatgtgcagaaaatgtcag
DBGET
integrated database retrieval system
