Empidonax traillii (willow flycatcher): 114071429
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Entry
114071429 CDS
T05887
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etl03036
]
114071429 (SHOC1)
Chromosome and associated proteins [BR:
etl03036
]
Eukaryotic type
Meiosis-specific proteins
Others
114071429 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
114071429
NCBI-ProteinID:
XP_027765095
LinkDB
All DBs
Position
Unknown
AA seq
1424 aa
AA seq
DB search
MFAALQYHSTDYLYESMARQKFSIWRLSLCFPPCLYQDEKYHLTGLFTDDKYRKPWTRVT
STQNMVAISVLDQWKKSLPVEDFLEKKPVSSVELKIGNELMEVIPSSNPCSQTDIEEPLL
LMNEVFKEEYTQEKYLKIYYVNEFKEPWQDLYLEEEFSFIDNLESFRKNLPTLSVLLSRL
QFFLVKDPFLDSEGQILTEENIFRECLIFQNEMKIEESKNELLEIKENFCTIPIKEEEYF
MLPTELEFTKPSNGRSDSAKIPSYLELKELLNLASDTMADEDLCKEVIKEHLKAEIAHQV
EISKYCPIPQEVCSSNSTSMLEFCESAEYIPYLKDEMEIPLTPPCRQQSSWFNFLCRGLQ
EELLPLSGNSILVTGPSREYLESLVWQSEKYRDNMSSLLLVEHQAVNLVPQHHSLTELQE
MLPVEIEAPMLSSLEKGWWLHLGLNLAATEILEQLHMDDSNANSLIPTEIEKFTRFTSYQ
LEKWLEENSVTNQELLPAERHQVDKVVNPDLSLQTQRQYFGLPMSAASSPKIHSTNTSGG
ELTGGINRKIKAEEAICFLNQEKKTPKSSESVSCKGVSSNVDSSCCSEKPGSLALATKWD
NDDSDLNNFIMMRSKHTLRQREEKNYVDRPGKVLQSEEKHMHVHKEDDSACEILKTEEKT
QENEDGITVNIQASESQCQAYCLLEDAAIPVLKDLTRLGVLASVNWSFGSVKFDHTRFFL
KQQEKVVCDNFEQGKIDEKEIMLFRHAALVHLLVTVRDLLLSCGLDTALGYLSKAKDIYK
NILESCLNNIWRQLKIVQYSSQKKHETNPKITALQCEMLNWMKSYGQKHSVKILIIIRMD
SEREKAALIHLLSKVEGLKAVDLNSEKKGTLLACKDIISNLNRYSCIIVLNQQIGADFPW
AHFSLVMEYDYTEDSCWRNLCKNLNIAYMTFKTTLPEAIQMGNHSDSFLLDVQIPYVFLT
TEGLLNMPDILQLFESKYSITFVERTSSYSLRLFGSVDRYVVLTIDECTAIFLQSVEELN
YENSCDTLISRLIALSLQYTCCWIVFYSRERLSSEYSLKGDTLLNLVLFYATLIELTQKS
EEFEVKVVLMPGIEETALVIRQIADNILIASNVSPHEWLDKSWLSVLPSETEKCLLTFPC
INPLVAQFMLKKGSSLNRLFLASFDQLQELLPEVPKKVLKHFSDMMSSYNLNAAPLEKTV
QGASQPEKQKNLNTICPDYKQNQALDLLDKALNSTGTTHMDSEALIPPLKLCKGFLKSDL
PSCMQKNACSSDVITRRKQNFFAVSKDYEDFAHLDVPNSLRVQRQPFRIHDGSDLSSKDS
EKEDFIATFNVCEPQESSKSFLEEFRDTFKSPEIQIDQAPWNDSSSTGLCNSFACDGFLS
DFFVDTDELQNLNFNQIGRESKGKRKKRAKEKNKTGMSKASRIC
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagctttacagtatcactcaacagactacttatatgagagcatggcaaggcag
aagttttccatctggagattatcactttgctttcctccctgtttatatcaagatgaaaag
tatcatctcacaggactcttcactgatgataaatataggaagccatggactagagttact
tcaacacagaacatggtcgctatttcggtattggatcagtggaagaaaagcttacctgtg
gaggatttcctggaaaagaaacccgtctcttctgtagagctcaagattggaaatgaatta
atggaagttattccaagttcaaatccctgctctcagactgacatagaagaacccctttta
cttatgaatgaagtttttaaggaagaatacacccaagaaaaatatctgaagatttactat
gtcaatgaatttaaagaaccatggcaagatttatatttggaagaggaattttcttttatt
gataatcttgaaagttttcgtaaaaacctgccaactttatccgtacttctgagcagacta
cagttttttttagtgaaagatccctttttagattctgaaggacagattttaacagaagag
aacattttcagagaatgtttgattttccaaaatgaaatgaagatagaagagagtaaaaat
gaattgctggagattaaagagaacttctgtaccatacctataaaagaggaagagtatttc
atgttgcccactgagttagaattcaccaaacccagcaatggcagatctgattctgccaaa
attccatcatacttggaactgaaagagttgttaaatttagcctcagacaccatggctgat
gaagatctgtgcaaagaagtgatcaaagaacatctcaaagcagaaattgcacaccaagta
gaaatttccaagtactgtcccattccacaagaagtttgctccagtaatagcacaagtatg
ctggaattctgtgagtcagctgaatatattccatatttgaaagacgaaatggaaatacct
ttaactcctccatgcagacaacaaagttcatggtttaattttctgtgcagaggacttcag
gaagaacttcttcctctctctggtaacagtattttggttacagggccctctagggaatac
ttagaatctttggtatggcagtcagagaagtatcgggataatatgagctctcttttgctt
gtcgagcatcaagctgttaaccttgtgcctcagcatcattcactgacagaactgcaggaa
atgctacctgttgagatagaagcaccaatgcttagctcactagagaagggctggtggctt
catttgggtttaaatctagcagccacagaaattttggagcaattacatatggatgacagt
aatgcaaacagtttgattcctacagaaatagaaaaattcacacgatttacatcatatcag
ctggaaaaatggcttgaagaaaattctgtgacaaaccaagagctgcttcctgctgaaaga
catcaggtggacaaagtagtaaatcctgacttgtcactgcagactcaaaggcagtacttt
ggtctgcctatgagtgctgcatcatctcccaaaattcacagcacaaatacatctggggga
gagcttactggaggaatcaacaggaagattaaggcagaagaggcaatttgtttcttaaac
caagaaaagaaaactcccaaatcatctgaatcagtcagctgtaaaggtgtatcctctaac
gtagacagctcatgctgtagtgaaaagcctggatcacttgcactggctacaaaatgggac
aacgatgattctgatctgaacaactttatcatgatgagatccaaacatacactgagacaa
agagaggaaaaaaattatgtagatagacctggaaaagtgctacaatctgaagaaaaacat
atgcatgttcacaaagaggatgattctgcttgtgagattttaaaaacagaggaaaaaacc
caagagaatgaagatggtatcacagtcaatattcaagcatcagaaagccagtgccaggca
tactgcctcttggaagacgcagccattcctgtgctaaaagatttgacacgtctgggtgta
cttgcttccgtaaattggagctttggcagtgttaaatttgatcatacaaggtttttctta
aaacagcaagaaaaagtagtgtgcgataattttgaacaaggtaaaatagatgagaaggag
atcatgctgttcagacatgctgctctggtacacctgctggtgacagttcgagatctgctc
ttgtcatgtggcttggacacagcattaggttatttgtccaaggcaaaggatatctataaa
aacatcttagaatcctgtttgaataacatctggaggcagttgaagattgtacaatacagc
agccagaaaaagcatgaaacaaatcccaaaataacagctcttcagtgtgaaatgttaaat
tggatgaaaagttatggacagaaacacagtgttaagatactaatcattataagaatggac
tcagaaagagaaaaagcagcccttattcacctattatctaaggtagaaggtttaaaagct
gtggatttgaattctgagaaaaaaggaacccttttagcttgtaaagatatcataagcaac
cttaatagatattcctgcattattgtacttaatcagcaaattggagccgacttcccttgg
gcacacttttcattagtaatggaatatgattatactgaagattcttgctggagaaatctg
tgcaaaaatctgaatattgcttacatgacttttaaaactactctccctgaagcaatacaa
atggggaatcacagcgattcttttcttctggatgtacagattccatatgtatttctgaca
actgaaggccttcttaatatgccagatattcttcagctttttgaatccaagtacagcatt
acctttgttgaaagaaccagtagttactccttaaggctctttggaagtgtagatcgatat
gtggtgttgacaatagatgaatgtactgctatctttttgcagagtgtggaagaactaaat
tatgagaattcctgtgacactttaatatcgaggctgatagcattatcgctccaatacaca
tgctgttggattgttttctattccagagaaagattgagttcagagtacagtctcaaggga
gatactctgcttaaccttgtcttattttatgccactctaattgagcttacacagaagtca
gaagagtttgaagtgaaggtagttcttatgccggggatcgaagagacagcactggtaatt
cgtcagattgctgacaacattttgatagcatctaatgtcagtcctcatgagtggctggac
aaatcctggctttctgtcttgccatctgagacagagaaatgcctgcttacttttccatgt
atcaaccctctggttgctcagtttatgttaaagaagggatcttcattgaacaggctgttt
cttgcaagctttgatcaactgcaggaacttctgccagaggttccaaaaaaagttttaaag
cattttagtgacatgatgtcttcatacaacctaaatgctgctccactagaaaaaacagtg
caaggtgcatcacagccagaaaaacagaaaaacctcaacacaatctgtcctgattataag
caaaatcaggctttagatctgcttgataaggccctaaacagcacaggaacaactcatatg
gattctgaagccttgattcctccattgaaactctgtaagggttttttaaagtctgatctt
ccaagctgtatgcaaaagaatgcatgctcttcagatgtaattacaaggaggaagcagaat
ttctttgctgtatcaaaggactatgaagattttgcccatctagatgttccaaattctctt
cgtgttcaaagacagccgttcaggatacatgatggctctgatctgtcttctaaagactct
gaaaaagaggatttcattgcaactttcaacgtctgtgaacctcaggagagctctaagagt
tttctagaagaatttagggatacatttaaaagccctgaaattcagattgaccaggcccca
tggaatgactcctcatccacaggcctgtgtaattcattcgcatgtgatggtttcctctcc
gacttctttgttgacacagatgagcttcaaaatctgaattttaaccaaataggtagagag
tctaaaggcaagagaaaaaaaagggcaaaagaaaaaaataaaacaggtatgtctaaagca
agcagaatttgctga
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